Factsheet for Bra011230.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 3
golgi 3
plastid 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28224	Canola	endoplasmic reticulum, vacuole	100.0	100.0
CDX68701	Canola	endoplasmic reticulum, extracellular	96.1	94.97
Bra010268.1-P	Field mustard	cytosol	82.54	85.59
Bra024037.1-P	Field mustard	cytosol	55.93	82.5
AT4G30890.2	Thale cress	cytosol	74.24	79.49
GSMUA_Achr1P11380_001	Banana	cytosol	44.41	70.24
GSMUA_Achr8P09770_001	Banana	cytosol	43.05	59.35
KRH39864	Soybean	cytosol	52.88	58.65
KRH23933	Soybean	cytosol	53.73	58.6
VIT_13s0019g01690.t01	Wine grape	cytosol	53.05	56.6
OQU81355	Sorghum	cytosol, nucleus, plastid	7.12	53.85
Solyc01g068240.2.1	Tomato	cytosol	47.63	52.72
PGSC0003DMT400033175	Potato	mitochondrion	14.07	49.7
Zm00001d022414_P001	Maize	cytosol	46.1	49.28
PGSC0003DMT400033182	Potato	cytosol	11.53	48.23
Os07t0661300-01	Rice	cytosol, plasma membrane	39.32	47.44
PGSC0003DMT400033184	Potato	cytosol	14.41	46.45
PGSC0003DMT400033173	Potato	mitochondrion	21.69	36.06
TraesCS2A01G127200.3	Wheat	cytosol	45.25	35.7
HORVU2Hr1G022340.2	Barley	cytosol	44.75	34.78
TraesCS2D01G129600.2	Wheat	cytosol	45.25	34.63
TraesCS2B01G149000.2	Wheat	cytosol	44.92	34.37
Bra038533.1-P	Field mustard	nucleus	15.76	26.2
Bra010647.1-P	Field mustard	nucleus	15.93	25.27
Zm00001d007096_P007	Maize	mitochondrion	44.24	22.06
Bra011823.1-P	Field mustard	nucleus	15.76	21.09
Bra028566.1-P	Field mustard	cytosol	14.41	16.87
Bra007837.1-P	Field mustard	nucleus	14.24	16.47
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	17.29	16.16
Bra011290.1-P	Field mustard	vacuole	16.44	15.85
Bra022060.1-P	Field mustard	nucleus	15.59	13.83
Bra021031.1-P	Field mustard	nucleus	14.75	13.55
Bra025000.1-P	Field mustard	endoplasmic reticulum	16.27	13.17
Bra024386.1-P	Field mustard	golgi	17.12	13.17
Bra027341.1-P	Field mustard	mitochondrion	15.08	12.95
Bra020400.1-P	Field mustard	nucleus	16.61	11.76
Bra006790.1-P	Field mustard	nucleus, plastid	16.44	11.67
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	16.61	11.17
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	16.78	11.1
Bra019219.1-P	Field mustard	golgi	18.81	10.97
Bra013814.1-P	Field mustard	golgi	18.31	10.59
Bra002683.1-P	Field mustard	nucleus	16.61	9.98

Protein Annotations

MapMan:19.2.3.1.1.10	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra011230	EnsemblPlants:Bra011230.1	EnsemblPlants:Bra011230.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889
UniProt:M4D426	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44747
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0002546BBC	InterPro:USP_CS	InterPro:USP_dom
SEG:seg	:	:	:	:	:

Description

AT4G30890 (E=5e-204) UBP24 | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA01:+:3187132..3189423

Molecular Weight (calculated)

64755.6 Da

IEP (calculated)

8.971

GRAVY (calculated)

-0.418

Length

590 amino acids

Sequence
(BLAST)

001: MLVATWLLYS SYSLRLNVFV FGSFTEHETR SLLEQQKPIK APQNHKEKSV GSIQFGSFNL VTGSSPVNTN GELKKAQAAD GVVKSRPSSS HKEDSAVSQK
101: RVDAPRPSSS HKEDRSIQSA VSQKRLDASR PSSSDKVAKL PVKHSSGVPE HVVENGTIKE VSERKPLNNG VAVKASLEKL CVSDGESDAL YKATSSKFQA
201: LDSEIFSSDS SPASIPRKNN QMVHTEPAPP LKDFTPRGLI NAGNLCFLNA TLQALLSCSP FVQLLQGIQL QDIPKAESPT LAAFSEFISE LDAPSSSSFR
301: NNVTVVESGR PFTPAMFETV LRNFTPDVLN NMSGRPRQED AQEFLSFIMD QMHDELLKLR DESPRLTGSK SSVLSSASDD DEWETVGPKN KSAVTRTQSF
401: VPSQLSDIFG GELRSVVKAQ GNKDSATVQP YLLLHLDIHP EAVCTIEDAL HLFSAPEDLE GYRASVTGKA GVVSARKSIK IQKLSKIMIL HLMRFSYGNQ
501: GSTKLHKPVH FPLELNLGRY LLASPSNGGL KYELVATITH HGRDPSKGHY TADARRKNNQ WLRFDDASVT AIGPKQVLHD QAYVLFYKQV

Best Arabidopsis Sequence Match ( AT4G30890.3 )
(BLAST)

001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V

Arabidopsis Description

UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.