Factsheet for GSMUA_Achr8P09770_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P11380_001	Banana	cytosol	67.76	77.75
CDX72275	Canola	cytosol	55.14	63.78
Bra024037.1-P	Field mustard	cytosol	54.44	58.25
Os07t0661300-01	Rice	cytosol, plasma membrane	56.78	49.69
KRH39864	Soybean	cytosol	61.68	49.62
KRH23933	Soybean	cytosol	62.62	49.54
PGSC0003DMT400033182	Potato	cytosol	16.12	48.94
VIT_13s0019g01690.t01	Wine grape	cytosol	62.62	48.46
PGSC0003DMT400033175	Potato	mitochondrion	18.69	47.9
PGSC0003DMT400033184	Potato	cytosol	20.33	47.54
Solyc11g065210.1.1	Tomato	cytosol	58.18	46.63
PGSC0003DMT400034298	Potato	cytosol	57.94	46.44
Solyc01g068240.2.1	Tomato	cytosol	57.48	46.15
CDY23262	Canola	nucleus	58.41	45.7
AT4G30890.2	Thale cress	cytosol	57.48	44.65
Bra010268.1-P	Field mustard	cytosol	59.35	44.64
Zm00001d022414_P001	Maize	cytosol	57.48	44.57
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	59.35	43.05
CDY28224	Canola	endoplasmic reticulum, vacuole	59.35	43.05
CDY36465	Canola	cytosol	58.88	42.93
CDX68701	Canola	endoplasmic reticulum, extracellular	58.64	42.04
PGSC0003DMT400033173	Potato	mitochondrion	29.21	35.21
OQU90420	Sorghum	mitochondrion	58.64	34.06
TraesCS2A01G127200.3	Wheat	cytosol	56.54	32.35
HORVU2Hr1G022340.2	Barley	cytosol	55.84	31.49
TraesCS2D01G129600.2	Wheat	cytosol	56.31	31.26
TraesCS2B01G149000.2	Wheat	cytosol	56.07	31.13
GSMUA_Achr10P...	Banana	cytosol	20.79	25.8
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	21.03	25.57
GSMUA_Achr7P19160_001	Banana	mitochondrion	17.99	25.25
GSMUA_Achr8P14390_001	Banana	cytosol	21.03	24.59
GSMUA_Achr10P...	Banana	nucleus	21.26	24.33
GSMUA_Achr7P05090_001	Banana	vacuole	23.36	21.41
GSMUA_Achr7P05330_001	Banana	cytosol	15.65	21.0
Zm00001d007096_P007	Maize	mitochondrion	56.78	20.54
GSMUA_Achr7P19170_001	Banana	cytosol	6.31	20.15
GSMUA_Achr3P04660_001	Banana	nucleus	23.83	17.0
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	21.96	16.04
GSMUA_Achr7P17050_001	Banana	plastid	19.16	15.71
GSMUA_Achr9P10330_001	Banana	mitochondrion	20.79	14.29
GSMUA_Achr7P19010_001	Banana	nucleus	13.55	12.61
GSMUA_Achr10P...	Banana	nucleus	11.68	12.32
GSMUA_Achr3P03560_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	22.2	11.34
GSMUA_Achr5P22990_001	Banana	vacuole	22.2	10.57
GSMUA_Achr4P01920_001	Banana	nucleus	23.6	10.46
GSMUA_Achr2P20080_001	Banana	plasma membrane	22.66	10.31
GSMUA_Achr3P17560_001	Banana	endoplasmic reticulum, golgi	21.5	9.94
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	19.63	9.89
GSMUA_AchrUn_...	Banana	golgi, vacuole	21.26	8.98
GSMUA_Achr10P...	Banana	golgi	9.35	8.89
GSMUA_Achr1P10260_001	Banana	endoplasmic reticulum, plasma membrane	22.9	8.66
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	7.48	8.29

Protein Annotations

MapMan:19.2.3.1.1.10	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	EnsemblPlantsGene:GSMUA_Achr8G09770_001	EnsemblPlants:GSMUA_Achr8P09770_001	EnsemblPlants:GSMUA_Achr8T09770_001	InterPro:IPR028889
UniProt:M0TP30	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44747
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI000295B090	InterPro:USP_CS	InterPro:USP_dom
SEG:seg	:	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase 24 [Source:GMGC_GENE;Acc:GSMUA_Achr8G09770_001]

Coordinates

chr8:-:6886792..6896154

Molecular Weight (calculated)

46820.1 Da

IEP (calculated)

7.474

GRAVY (calculated)

-0.098

Length

428 amino acids

Sequence
(BLAST)

001: MEKRKDTLGL VSPHITEKGV AGAELSASPK VQEGWVQASK ANSISVDSSA IESPVVDIPK ALADKAPNVK SILPRGLINS GNLCFLNATL QALLSCSLFV
101: QLLQDLRSQS IPEIGYPTLH TFIKFISEFD MPDVLSAKSN VKVTFESGKS FSPIMFDAVL KRFTPDLPIG ISSRPRQEDA QEFLSFIMDQ MHDELLKLDG
201: IFASTDGGEV PLISSSEDDG WETVGPKNRS AITRTQSFFP SRLSAIFGGQ LRSVVKARGN KASATVQPFL LLHLDIFPES VNTIEDALHL FAAPETLEGY
301: RTSAGKAGLV SASKSVKLQK LSKVMILHLM RFSYGSEGST KLHKPVHFPL ELVLVHELIV SPSSESRRYE LVATITHHGQ GPSEGHYTAN AKCSSGRWLH
401: YDDASVTAVT PNKVLHDRAY VLFYKQIQ

Best Arabidopsis Sequence Match ( AT4G30890.3 )
(BLAST)

001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V

Arabidopsis Description

UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.