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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, endoplasmic reticulum, nucleus
BaCelLo:nucleus
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra024037.1-P Field mustard cytosol 92.16 85.25
GSMUA_Achr1P11380_001 Banana cytosol 69.19 68.63
CDY23262 Canola nucleus 92.16 62.34
CDY36465 Canola cytosol 91.89 57.92
AT4G30890.2 Thale cress cytosol 84.86 56.99
CDY28224 Canola endoplasmic reticulum, vacuole 90.27 56.61
CDX68701 Canola endoplasmic reticulum, extracellular 89.73 55.61
GSMUA_Achr8P09770_001 Banana cytosol 63.78 55.14
OQU81355 Sorghum cytosol, nucleus, plastid 10.81 51.28
PGSC0003DMT400033175 Potato mitochondrion 22.16 49.1
PGSC0003DMT400033182 Potato cytosol 18.65 48.94
KRH39864 Soybean cytosol 70.0 48.68
KRH23933 Soybean cytosol 70.81 48.43
VIT_13s0019g01690.t01 Wine grape cytosol 71.08 47.56
PGSC0003DMT400033184 Potato cytosol 22.97 46.45
Os07t0661300-01 Rice cytosol, plasma membrane 59.46 44.99
Solyc01g068240.2.1 Tomato cytosol 63.51 44.09
Zm00001d022414_P001 Maize cytosol 63.24 42.39
PGSC0003DMT400033173 Potato mitochondrion 32.43 33.8
TraesCS2A01G127200.3 Wheat cytosol 60.27 29.81
HORVU2Hr1G022340.2 Barley cytosol 60.27 29.38
TraesCS2D01G129600.2 Wheat cytosol 60.0 28.79
TraesCS2B01G149000.2 Wheat cytosol 59.73 28.66
CDX76934 Canola nucleus 23.78 24.86
CDY13770 Canola nucleus 23.78 24.72
CDY68864 Canola nucleus 24.05 23.92
CDX69375 Canola nucleus 23.78 23.72
CDY63898 Canola nucleus 24.05 22.36
Zm00001d007096_P007 Maize mitochondrion 60.81 19.02
CDY68683 Canola endoplasmic reticulum, vacuole 24.05 18.28
CDY50263 Canola cytosol 12.43 16.97
CDX75188 Canola vacuole 25.41 15.38
CDY45587 Canola endoplasmic reticulum, vacuole 25.95 15.17
CDX68773 Canola nucleus, plasma membrane 25.14 15.15
CDY20330 Canola vacuole 25.95 14.93
CDY34761 Canola endoplasmic reticulum, vacuole 25.95 14.91
CDX76801 Canola endoplasmic reticulum, golgi, vacuole 25.95 14.75
CDX85744 Canola cytosol 22.43 14.26
CDY40119 Canola nucleus 22.43 14.21
CDX87681 Canola nucleus 23.24 13.65
CDX76553 Canola cytosol 23.24 13.4
CDY37145 Canola cytosol 23.51 13.06
CDX75770 Canola mitochondrion, nucleus 22.97 12.8
CDX98449 Canola mitochondrion 24.32 12.78
CDX97571 Canola mitochondrion 24.32 12.71
CDY58499 Canola endoplasmic reticulum 24.32 12.48
CDY08792 Canola vacuole 24.32 12.02
CDY14564 Canola golgi 24.32 11.81
CDX77686 Canola endoplasmic reticulum 23.51 11.52
CDY32735 Canola nucleus 24.86 11.49
CDX96790 Canola nucleus 25.68 11.38
CDY02782 Canola nucleus 24.59 11.36
CDX83925 Canola nucleus 25.68 11.22
CDY11838 Canola nucleus, plastid 24.59 11.11
CDX88651 Canola nucleus, plastid 24.59 11.04
CDY57464 Canola nucleus 24.86 10.85
CDY55010 Canola nucleus 24.86 10.82
CDY65125 Canola endoplasmic reticulum, plasma membrane, vacuole 25.41 10.72
CDY48465 Canola endoplasmic reticulum, plasma membrane, vacuole 25.14 10.62
CDY11021 Canola golgi 26.22 9.61
CDY03441 Canola golgi 26.22 9.58
CDY34291 Canola golgi 25.68 9.31
CDX92643 Canola golgi 24.86 9.08
CDX87682 Canola cytosol 0.0 0.0
Protein Annotations
MapMan:19.2.3.1.1.10Gene3D:3.90.70.10GO:A0A078C609EnsemblPlants:CDX72275ProteinID:CDX72275ProteinID:CDX72275.1
GO:GO:0003674GO:GO:0003824GO:GO:0006464GO:GO:0006511GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0009987GO:GO:0016579GO:GO:0016787GO:GO:0019538GO:GO:0036459
EnsemblPlantsGene:GSBRNA2T00099747001InterPro:IPR028889PFAM:PF00443ScanProsite:PS00972ScanProsite:PS00973PFscan:PS50235
PANTHER:PTHR44747InterPro:Papain_like_cys_pep_sfInterPro:Peptidase_C19_UCHSUPFAM:SSF54001UniParc:UPI0004EE2B8CInterPro:USP_CS
InterPro:USP_domSEG:seg::::
Description
BnaC07g42970D
Coordinates
chrLK031796:-:388928..390582
Molecular Weight (calculated)
40836.9 Da
IEP (calculated)
8.615
GRAVY (calculated)
-0.241
Length
370 amino acids
Sequence
(BLAST)
001: MVVTEAPLPI KDFTPRGLIN AGNLCFLNAT LQALLSCSPL VQLLQGLQLQ DIPKAESPTL SAFSEFISEL DAPSSSSFRN NVAVVESYRP FTPSMFEGVL
101: RSFTPDVLNN MSGRPRQEDA QEFLSFIMDQ MHDELLKLKE VSPKLTASKS SVVTSANDED DEWETVGPKN KSAVTRTQSF VPSELSDIFG GQLRSVVKAK
201: GSKDSATVQP YLLLHLDIHP GAVSTIEDAL HLFSAPEDLE GYRASVTGKA GVASARKSIK IQKLSKIMIL HLMRFSYGNQ GSTKLHKPVH FPLELNLGRY
301: LLVSPSNGGL KYELVATITH RGRDPSKGHY TTDARRKNNQ WLRFNDASVT AVGTKQVLHD QAYVLFYKQL
Best Arabidopsis Sequence Match ( AT4G30890.3 )
(BLAST)
001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V
Arabidopsis Description
UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.