CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14400.1	CDY42827	AT2G42580.1	19000166
AT3G14400.1	CDY51514	AT2G42580.1	19000166
AT3G14400.1	CDY55390	AT2G42580.1	19000166
AT3G14400.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G14400.1	Thale cress	mitochondrion	76.36	76.7
CDX97571	Canola	mitochondrion	77.11	72.32
CDX98449	Canola	mitochondrion	76.51	72.16
Zm00001d000312_P002	Maize	plastid	21.69	51.25
VIT_19s0093g00560.t01	Wine grape	mitochondrion	48.19	50.39
KRH43852	Soybean	nucleus	47.29	48.99
KRH13611	Soybean	nucleus	46.84	47.7
PGSC0003DMT400071055	Potato	mitochondrion	41.87	44.98
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	45.93	44.46
GSMUA_Achr9P10330_001	Banana	mitochondrion	39.76	42.38
Os05t0510300-01	Rice	plastid	36.6	37.73
TraesCS1B01G342600.2	Wheat	plastid	36.14	37.15
TraesCS1A01G329200.2	Wheat	plastid	36.14	36.98
TraesCS1D01G331300.1	Wheat	plastid	35.84	36.84
HORVU1Hr1G077630.2	Barley	plastid	35.84	36.67
KXG22316	Sorghum	plastid	35.99	35.3
Zm00001d010710_P002	Maize	plastid	34.79	33.82
CDX69375	Canola	nucleus	14.91	26.68
CDX76934	Canola	nucleus	14.16	26.55
CDY68864	Canola	nucleus	14.76	26.34
CDY13770	Canola	nucleus	13.86	25.84
CDY63898	Canola	nucleus	14.91	24.87
Zm00001d000313_P001	Maize	nucleus	13.4	24.05
CDX72275	Canola	cytosol	12.8	22.97
CDX75188	Canola	vacuole	18.83	20.46
CDY45587	Canola	endoplasmic reticulum, vacuole	19.28	20.22
CDY20330	Canola	vacuole	19.58	20.22
CDY68683	Canola	endoplasmic reticulum, vacuole	14.76	20.12
CDX68773	Canola	nucleus, plasma membrane	18.52	20.03
CDY34761	Canola	endoplasmic reticulum, vacuole	19.28	19.88
CDX76801	Canola	endoplasmic reticulum, golgi, vacuole	19.13	19.51
CDY50263	Canola	cytosol	7.68	18.82
CDY32735	Canola	nucleus	21.69	17.98
CDY02782	Canola	nucleus	21.39	17.73
CDX88651	Canola	nucleus, plastid	21.54	17.35
CDY11838	Canola	nucleus, plastid	21.39	17.34
CDY55010	Canola	nucleus	21.99	17.18
CDX87681	Canola	nucleus	16.27	17.14
CDY57464	Canola	nucleus	21.84	17.1
CDY08792	Canola	vacuole	19.13	16.96
CDX76553	Canola	cytosol	16.27	16.82
CDY14564	Canola	golgi	19.28	16.8
CDY37145	Canola	cytosol	15.96	15.92
CDX96790	Canola	nucleus	19.28	15.33
CDX85744	Canola	cytosol	13.4	15.29
CDY23262	Canola	nucleus	12.5	15.17
CDX83925	Canola	nucleus	19.28	15.11
CDY58499	Canola	endoplasmic reticulum	16.27	14.98
CDY40119	Canola	nucleus	12.95	14.73
CDY28224	Canola	endoplasmic reticulum, vacuole	12.95	14.58
CDX77686	Canola	endoplasmic reticulum	16.57	14.57
CDY48465	Canola	endoplasmic reticulum, plasma membrane, vacuole	19.13	14.5
CDY65125	Canola	endoplasmic reticulum, plasma membrane, vacuole	19.13	14.48
CDY36465	Canola	cytosol	12.8	14.48
CDX68701	Canola	endoplasmic reticulum, extracellular	12.8	14.24
CDY11021	Canola	golgi	18.98	12.49
CDX92643	Canola	golgi	18.98	12.44
CDY34291	Canola	golgi	18.37	11.96
CDY03441	Canola	golgi	18.07	11.85
CDX87682	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:19.2.3.1.1.11	Gene3D:3.90.70.10	GO:A0A078CFX6	EnsemblPlants:CDX75770	ProteinID:CDX75770	ProteinID:CDX75770.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
EnsemblPlantsGene:GSBRNA2T00123712001	InterPro:IPR028889	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235
PANTHER:PTHR45511	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0004EDF814	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

BnaC03g38530D

Coordinates

chrLK031805:-:461866..465190

Molecular Weight (calculated)

73730.7 Da

IEP (calculated)

9.025

GRAVY (calculated)

-0.628

Length

664 amino acids

Sequence
(BLAST)

001: MSWMPSLLTQ KRRNGPPLGL RNLCNTCYLN SVLQCLTYTP PFANYCLSHT HSSLCDSYVN GERKRDCPFC LVEKRIARSL SIDQATDAPN RILNCLKVFA
101: EHFKLGRQED AHEFLRYLLD ACHNASLRLK KFRPKGVGAE SSEENTVVKE IFGGALQSQV KCLPCGAESS KGDEIMDISL GILHSSSVKE SMHKFFQPEI
201: LDGNNKYKCE SCKKLVTARK QMSLLQAPNI LVVQLKRFEG IFGGKIDKPI TFGEILVLST FMSKASKDPQ PEYKLFGIIV HSGISPESGH YYAYVKDPLG
301: QWYCCNDSFV SISTLQEVLS EKAYILLFSR SNQRPASAKT LVISSGTTSR DGNGCETSKP RKFIGPLNNV NMNPRAEQSN FHKDNNMSSS KPHKFIRPNA
401: NMKPRAEQSL HKSNTIPPRV EKAPLKPHAN ISTSVNLGSK RVTPTVNGCQ VQDIALDSDK ENIGSVSAMK VYTCSEMKFG TENGGSGVEE NGSAQGSSSH
501: NNEVKLHPHE PNGSSNGGDH HKDNLLHPWK SNDGSQNETD HQEIEKDGVS TTPSKVLAPS TKKDPCILLR KDEPSRHELE AIKESLKKDA SSFLRTCGWY
601: DQVHSSMRAK KRLCSEQSGG DGEDSNDLKR RLIGDVKSSS LQIPDELKAH LVNRLRKIGK KKYS

Best Arabidopsis Sequence Match ( AT3G14400.1 )
(BLAST)

001: MGFKLQMSWM PSLLSQKRRN GPPLGLRNLG NTCYLNSVLQ CLTFTPPLAN FCLTHKHSSH CDTYVDGERK RDCPFCIVEK RIARSLSVDL TTDAPNKISS
101: CLKIFAEHFK LGRQEDAHEF LRYVIDACHN TSLRLKKLRY NGNEPFNGNS VVKEIFGGAL QSQVKCLSCG AESNKADEIM DISLEILQSS SVKESLQKFF
201: QSEILDGNNK YRCESCEKLV TARKQMSILQ APNILVIQLK RFGGIFGGKI DKAISFGEIL VLSNFMSKAS KDPQPEYKLF GIIVHSGFSP ESGHYYAYVK
301: DSLGRWYCCN DSFVSLSTLQ EVLSEKAYIL FFSRSNQRPA SAKTLVTSNG TTSHEVNGCE TSNPQKFIGP LNGFNMKPQA EQSFQKGNLA SSKPHKFIRP
401: KPRAEQAPLE DNLLSSKVEK APLRPHAKVS ISVNLGAKRV SPVNGRLSFH QDENIAPKAN KENSVSVLPT KVNSGTERKF GTENGGNGVK ENGSAPGSSN
501: HKVALHPHER SNGSSNGGDH HKDNLHPCGS NGSQNGTAHP ETERNGVSTT QSKGLCSSTK EDPCILLRKD ESSRNELEAI KESLKKDALS HLRSCGWYDK
601: VLISMHAKKR LRTEQSGGED GSDLKRRLIE DVKSSLKSQI PEELKADLVN RIWEISKKKY S

Arabidopsis Description

UBP25Ubiquitin carboxyl-terminal hydrolase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.