Factsheet for TraesCS1B01G342600.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14400.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT3G14400.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT3G14400.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT3G14400.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT3G14400.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT3G14400.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT3G14400.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT3G14400.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT3G14400.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G331300.1	Wheat	plastid	97.83	97.83
TraesCS1A01G329200.2	Wheat	plastid	97.83	97.38
HORVU1Hr1G077630.2	Barley	plastid	95.36	94.92
Zm00001d000312_P002	Maize	plastid	34.67	79.72
Os05t0510300-01	Rice	plastid	74.15	74.38
KXG22316	Sorghum	plastid	67.34	64.25
Zm00001d010710_P002	Maize	plastid	65.48	61.93
GSMUA_Achr9P10330_001	Banana	mitochondrion	51.55	53.45
Zm00001d000313_P001	Maize	nucleus	30.19	52.7
VIT_19s0093g00560.t01	Wine grape	mitochondrion	41.8	42.52
KRH43852	Soybean	nucleus	40.09	40.41
KRH13611	Soybean	nucleus	40.71	40.34
PGSC0003DMT400071055	Potato	mitochondrion	37.31	39.0
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	40.71	38.34
AT3G14400.1	Thale cress	mitochondrion	37.62	36.76
CDX75770	Canola	mitochondrion, nucleus	37.15	36.14
Bra027341.1-P	Field mustard	mitochondrion	37.62	35.37
CDX98449	Canola	mitochondrion	37.46	34.38
CDX97571	Canola	mitochondrion	37.62	34.32
TraesCS4B01G306100.1	Wheat	cytosol	15.17	26.78
TraesCS2B01G544700.1	Wheat	mitochondrion	13.62	23.78
TraesCS6B01G223900.1	Wheat	plastid	14.24	21.96
TraesCS2B01G408400.1	Wheat	cytosol	14.4	21.58
TraesCS3B01G442400.1	Wheat	cytosol	17.03	17.68
TraesCS6B01G291800.1	Wheat	nucleus	19.97	17.46
TraesCS7B01G051400.2	Wheat	nucleus	22.45	15.44
TraesCS5B01G243400.1	Wheat	vacuole	19.66	13.86
TraesCS6B01G389500.1	Wheat	nucleus	21.83	13.19
TraesCS1B01G207800.1	Wheat	cytosol, nucleus, plastid	17.49	13.14
TraesCS7B01G179000.2	Wheat	plastid	19.81	12.89
TraesCS6B01G231700.4	Wheat	plasma membrane	19.2	12.6
TraesCS2B01G149000.2	Wheat	cytosol	13.47	11.28
TraesCS7B01G405400.1	Wheat	golgi, plasma membrane	18.58	11.16

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	PFAM:PF00443	ScanProsite:PS00972	PFscan:PS50235
PANTHER:PTHR45511	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	EnsemblPlantsGene:TraesCS1B01G342600	EnsemblPlants:TraesCS1B01G342600.2
InterPro:USP_CS	InterPro:USP_dom	TIGR:cd02661	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:+:571056412..571062136

Molecular Weight (calculated)

70345.8 Da

IEP (calculated)

8.476

GRAVY (calculated)

-0.411

Length

646 amino acids

Sequence
(BLAST)

001: MAPTAEPASA APPRRPRSGP PPGLKNLGNT CYLNSVLQCL ASTPPLASFC LASRHSNLCK KVFPNRDKEC AFCVLERQIV RQLRAEAGAL DSPGKVLRSL
101: PLFAEHFRWG RQEDAHEFLR YVIDACHTAC LRIRKRLPVV TANGDCGPEE GRGQGSCMVM RETFGGALLS QVKCLVCKGE SNKTDEIMDL SLDLLGTSSV
201: GDALTCFFKP EVLEGANKYS CERCKKLTSA RKQMFILKAP KVLVIQLKRF DGIHGGKINR NIEFKEGLVL SDFMYDKNQD PQPVYNLFGS IVHSGFSQDS
301: GHYYAYVKDA AGRWYCCNDS HVSLSSSQDV LTEKVYILFY ILSSKTQKNS TNGYSSSAVK SSNTNGNGIS SAACSEPLKI PLVKQNGSCS TKGIVPLPLK
401: NGKIAPGLQF KPIHLKNTGT EKVASNGKPH PILRKPEVNE ATTLVESNGC GPGKSAEPSE GYANDSISCD KLDADSQRML QGTDGNGHPV HFVGLQETSG
501: AKATCAEKPP EQPSSVVTST LDKNICSSEK GPKSSVLHPE VSADSVKAVV ASAKDLKHHL EEGKFKEMLA ESASSELRSS GWADDVCSFM RSAKRQCIQN
601: TGTSQDSEAI RKQLISDSGR VFRSKIPELL REDLIQSLRS YFEDKF

Best Arabidopsis Sequence Match ( AT3G14400.1 )
(BLAST)

001: MGFKLQMSWM PSLLSQKRRN GPPLGLRNLG NTCYLNSVLQ CLTFTPPLAN FCLTHKHSSH CDTYVDGERK RDCPFCIVEK RIARSLSVDL TTDAPNKISS
101: CLKIFAEHFK LGRQEDAHEF LRYVIDACHN TSLRLKKLRY NGNEPFNGNS VVKEIFGGAL QSQVKCLSCG AESNKADEIM DISLEILQSS SVKESLQKFF
201: QSEILDGNNK YRCESCEKLV TARKQMSILQ APNILVIQLK RFGGIFGGKI DKAISFGEIL VLSNFMSKAS KDPQPEYKLF GIIVHSGFSP ESGHYYAYVK
301: DSLGRWYCCN DSFVSLSTLQ EVLSEKAYIL FFSRSNQRPA SAKTLVTSNG TTSHEVNGCE TSNPQKFIGP LNGFNMKPQA EQSFQKGNLA SSKPHKFIRP
401: KPRAEQAPLE DNLLSSKVEK APLRPHAKVS ISVNLGAKRV SPVNGRLSFH QDENIAPKAN KENSVSVLPT KVNSGTERKF GTENGGNGVK ENGSAPGSSN
501: HKVALHPHER SNGSSNGGDH HKDNLHPCGS NGSQNGTAHP ETERNGVSTT QSKGLCSSTK EDPCILLRKD ESSRNELEAI KESLKKDALS HLRSCGWYDK
601: VLISMHAKKR LRTEQSGGED GSDLKRRLIE DVKSSLKSQI PEELKADLVN RIWEISKKKY S

Arabidopsis Description

UBP25Ubiquitin carboxyl-terminal hydrolase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.