Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G207800.1 | Wheat | cytosol, nucleus, plastid | 67.2 | 48.6 |
| TraesCS2B01G408400.1 | Wheat | cytosol | 29.74 | 42.92 |
| Zm00001d047023_P001 | Maize | nucleus | 33.28 | 33.33 |
| OQU92076 | Sorghum | nucleus | 37.14 | 26.67 |
| TraesCS4B01G306100.1 | Wheat | cytosol | 15.27 | 25.96 |
| TraesCS6B01G291800.1 | Wheat | nucleus | 27.17 | 22.87 |
| TraesCS2B01G544700.1 | Wheat | mitochondrion | 13.18 | 22.16 |
| PGSC0003DMT400096420 | Potato | mitochondrion | 4.98 | 20.81 |
| TraesCS6B01G223900.1 | Wheat | plastid | 13.83 | 20.53 |
| TraesCS1B01G342600.2 | Wheat | plastid | 17.68 | 17.03 |
| TraesCS7B01G051400.2 | Wheat | nucleus | 21.22 | 14.06 |
| TraesCS5B01G243400.1 | Wheat | vacuole | 18.01 | 12.23 |
| TraesCS6B01G389500.1 | Wheat | nucleus | 20.74 | 12.07 |
| TraesCS7B01G179000.2 | Wheat | plastid | 17.85 | 11.18 |
| TraesCS6B01G231700.4 | Wheat | plasma membrane | 17.52 | 11.08 |
| TraesCS2B01G149000.2 | Wheat | cytosol | 13.67 | 11.02 |
| TraesCS7B01G405400.1 | Wheat | golgi, plasma membrane | 17.52 | 10.14 |
| CDX87682 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.90.70.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0036459 | InterPro:IPR028889 | PFAM:PF00443 | ScanProsite:PS00973 | PFscan:PS50235 |
| PANTHER:PTHR44033 | PANTHER:PTHR44033:SF1 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SUPFAM:SSF54001 | EnsemblPlantsGene:TraesCS3B01G442400 |
| EnsemblPlants:TraesCS3B01G442400.1 | InterPro:USP_CS | InterPro:USP_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3B:+:681952067..681956372
Molecular Weight (calculated)
69922.3 Da
IEP (calculated)
4.682
GRAVY (calculated)
-0.547
Length
622 amino acids
Sequence
(BLAST)
(BLAST)
001: MAADDGEPTT VVSPTPHPEE EPTLSADVLF EPTALSLLPP PREEDKEGED PEENPIVAPM LPSQLQVEKE EDEQLVPAAA LPDPLESGPA PFKGHEETSQ
101: DKDPFQVPGP ANEDKPCQDQ NPFQVLGPAP ANEIYEDGYP SHVYSGNPFG PSVPYTQTLL DSLNENLVRT RCCSRYKLIR AKNDFPMAAS LSNPENWTCF
201: LNCVLQCVVH LVPFVLKLLK HPHLGDCPSD EFCCYCFIRH HASEVIRHSG NVLYPRKFIK RLKLIFRGFK RGQHQDAHEF LRCLLDKLDM VTVTPSSKSK
301: EPSSIVNEFF GGEQKSQLNC PNCGRCSDRL ESFLDLNLEV NQMGNITDLL SAFTRIEVIE DYLCDGCKTR VNMEKCLKVE RAPKVLVIQL KRFQNFGGDI
401: SKIDHMVNYP FELDLKPFMS CTDDEPHTYD LYGIVQHFGE TARGHYVCYV RSSEIDWFLL NDDKVVKMSQ DKLLQMEAYM LFYVKKGESS WFSTLHQNKE
501: MLLSDYFGQL AGKGLDEDGA SKSGSYTSNE SDNECIEQHD AGSHGGSSQE NGRSCNLLQS SSHKNEDDYC CPENLTSHEE DEKMGLCDSP AGTSRIRLIG
601: SNSDRIVNGN MFLKLSAQEK GW
101: DKDPFQVPGP ANEDKPCQDQ NPFQVLGPAP ANEIYEDGYP SHVYSGNPFG PSVPYTQTLL DSLNENLVRT RCCSRYKLIR AKNDFPMAAS LSNPENWTCF
201: LNCVLQCVVH LVPFVLKLLK HPHLGDCPSD EFCCYCFIRH HASEVIRHSG NVLYPRKFIK RLKLIFRGFK RGQHQDAHEF LRCLLDKLDM VTVTPSSKSK
301: EPSSIVNEFF GGEQKSQLNC PNCGRCSDRL ESFLDLNLEV NQMGNITDLL SAFTRIEVIE DYLCDGCKTR VNMEKCLKVE RAPKVLVIQL KRFQNFGGDI
401: SKIDHMVNYP FELDLKPFMS CTDDEPHTYD LYGIVQHFGE TARGHYVCYV RSSEIDWFLL NDDKVVKMSQ DKLLQMEAYM LFYVKKGESS WFSTLHQNKE
501: MLLSDYFGQL AGKGLDEDGA SKSGSYTSNE SDNECIEQHD AGSHGGSSQE NGRSCNLLQS SSHKNEDDYC CPENLTSHEE DEKMGLCDSP AGTSRIRLIG
601: SNSDRIVNGN MFLKLSAQEK GW
001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT
Arabidopsis Description
UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.