Factsheet for TraesCS7B01G179000.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G493700.1
TraesCS2B01G521700.1
TraesCS2D01G493600.1
TraesCS4A01G246100.1
TraesCS4B01G069300.1
TraesCS4D01G068100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	TraesCS2A01G493700.1	AT4G13930.1	23232097
AT4G24560.1	TraesCS2B01G521700.1	AT4G13930.1	23232097
AT4G24560.1	TraesCS2D01G493600.1	AT4G13930.1	23232097
AT4G24560.1	TraesCS4A01G246100.1	AT4G37930.1	23232097
AT4G24560.1	TraesCS4B01G069300.1	AT4G37930.1	23232097
AT4G24560.1	TraesCS4D01G068100.1	AT4G37930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G280800.4	Wheat	plastid	97.78	97.88
TraesCS7A01G282200.4	Wheat	plastid	96.68	97.07
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	80.97	80.97
Zm00001d050489_P001	Maize	nucleus	31.92	69.37
OQU80649	Sorghum	nucleus	52.87	65.14
Os08t0478500-01	Rice	plastid	64.05	65.03
TraesCS5B01G243400.1	Wheat	vacuole	44.01	47.71
GSMUA_Achr10P...	Banana	nucleus	19.03	46.55
GSMUA_Achr7P19010_001	Banana	nucleus	20.14	43.48
GSMUA_Achr10P...	Banana	golgi	18.43	40.67
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	15.61	40.16
GSMUA_Achr5P22990_001	Banana	vacuole	35.75	39.49
AT5G65450.2	Thale cress	endoplasmic reticulum, golgi, mitochondrion, nucleus	29.41	38.93
CDY08792	Canola	vacuole	29.0	38.45
CDY14564	Canola	golgi	29.31	38.19
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	28.3	37.97
Bra024386.1-P	Field mustard	golgi	29.31	37.94
VIT_00s0199g00030.t01	Wine grape	vacuole	32.83	36.1
KRH69660	Soybean	golgi	31.62	33.48
KRH74502	Soybean	golgi, plasma membrane, vacuole	31.22	33.44
KRH52893	Soybean	extracellular, golgi, vacuole	29.51	33.0
KRH16837	Soybean	golgi	34.14	32.44
KRH72452	Soybean	golgi, plasma membrane	32.93	31.56
AT4G24560.1	Thale cress	extracellular, golgi	30.82	30.36
CDY11021	Canola	golgi	30.71	30.23
CDX92643	Canola	golgi	30.71	30.11
KRH62182	Soybean	golgi, vacuole	34.44	30.05
Bra019219.1-P	Field mustard	golgi	30.51	29.94
CDY03441	Canola	golgi	30.11	29.52
CDY34291	Canola	golgi	30.01	29.22
Bra013814.1-P	Field mustard	golgi	30.01	29.22
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	35.45	28.73
Solyc04g076210.2.1	Tomato	nucleus	31.72	28.66
TraesCS4B01G306100.1	Wheat	cytosol	10.27	27.87
TraesCS6B01G231700.4	Wheat	plasma membrane	25.08	25.3
TraesCS2B01G544700.1	Wheat	mitochondrion	9.06	24.32
TraesCS2B01G408400.1	Wheat	cytosol	10.27	23.67
TraesCS6B01G223900.1	Wheat	plastid	9.97	23.63
TraesCS7B01G405400.1	Wheat	golgi, plasma membrane	21.55	19.91
TraesCS1B01G342600.2	Wheat	plastid	12.89	19.81
TraesCS3B01G442400.1	Wheat	cytosol	11.18	17.85
TraesCS6B01G291800.1	Wheat	nucleus	12.49	16.78
TraesCS7B01G051400.2	Wheat	nucleus	14.9	15.76
TraesCS1B01G207800.1	Wheat	cytosol, nucleus, plastid	12.08	13.95
TraesCS6B01G389500.1	Wheat	nucleus	14.5	13.47
TraesCS2B01G149000.2	Wheat	cytosol	9.87	12.71

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR002893	InterPro:IPR028889
PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865
PANTHER:PTHR45499	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS7B01G179000	EnsemblPlants:TraesCS7B01G179000.2	InterPro:USP_CS	InterPro:USP_dom	InterPro:Znf_MYND	TIGR:cd02661
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:+:263104815..263116884

Molecular Weight (calculated)

109459.0 Da

IEP (calculated)

7.057

GRAVY (calculated)

-0.511

Length

993 amino acids

Sequence
(BLAST)

001: MAMAEAAGSS TAATAVTVVL FIVVLVVALL LRQSLRRAAE RREEVRRLAR LAAEESELAE RESVLAYCSE LFPGVLHAAD VPEAPMWAPQ EVVSPQEEEE
101: EVVEAPAPPP AAAGVCAVCF RSTTFRCKQC KAVKYCSFKC QISHWRKGHK DECHPPSANA KPDDGAAILV AKEGNVEHRR ASEENVVAGV QPVAEISVPV
201: VAESETSGTN HVVKSSNDKR KDTPFEEVSA TTEIPEKGNS DNVVKLGQVT PQVASFDSKR AESNTKSTNF VGNSSYVKDL DDILVHKSQA SAPKMSGLTS
301: SIHEDIYVHC KDHGNAEDAD VSKDCSRINH IRKPADRSYS QMAATAVPAP KSSRTFLRVE VEPCKIKATG EKKSEGLKLV TPVLAVDRVS SIHDGRSVAP
401: NPSKRADNPT DRGGSAANNL ATSLKKIVRQ QTTPKVVRHY PSELTLFPYD VFIKLYDKVE LRPFGLHNLG NSCYANVVLQ CLMFTRPLTT YLLGGLHSKN
501: CSKKAWCFMC EFERLIVEGK QGKTALSPTG ILSHLHEIGS SFGPGKQEDA HEFLRHSIDA MQSVCIKEAR KGGAHCLAEE TTLVQLIFGG YLRSKIKCTR
601: CHISSEQYER MLDLTVEIDG DISSLEEALQ RFTSTEVLDG DNRYQCSRCN SYERAKKKLT ISEAPNVLTI ALKRYQSGKF GKISKAIRFP ETLNLSCYMN
701: STDDNSPVYS LYGMVVHHDV MNAAFSGHYV CYVKDTHGKW YKIDDSQVKP VSLENVMSKC AYMLLYARAP NSVRHAMMVN DPSYAKKAKH KPNLEQTPLQ
801: RGSLNRHQGG ELHSDHITDN LTRRFDEFGD APYPAAESPS PSESSSLFSN SDAGSHSTVS TDSSESTRNS TSTDDYEQYF FGSSDQMYLG GPRGAHEEIG
901: YMSYSRSRSA LGTSSSGQEV DEERSVEQRF EVSRGGWLEG GESSPLSYTD QSKHHLLTEQ HRQFGGSEHD PGEARGSVLL RRSAREKTAQ TFY

Best Arabidopsis Sequence Match ( AT2G24640.1 )
(BLAST)

001: MHEVGLFVDL NSFTQLILTL FFVSIGLLYF VKRTAAKYFE VGGGSGGFDR DHRRDFMVSD TAECSVCGKA TTKKCSRCKS VRYCSAACQT SDWKSGHKLK
101: CKGFRSTDSS PVRRDDIDFE ASLFGNRSAS KKTRIALVPQ QSQSKATLKP TDVLFPYESF VRYYNWDRPI MAPCGLTNCG NSCFANVVLQ CLSWTRPLVA
201: YLLERGHKRE CRRNDWCFLC EFENHLDRAN YSRFPFSPMN IISRLPNIGG NLGYGRQEDA HELMRFAIDM MQSVCLDEFG GEKVVPPRAQ ETTLIQYIFG
301: GLLQSQVQCT ACSNVSDQYE NMMDLTVEIH GDAVSLEECL DQFTAKEWLQ GDNLYKCDRC DDYVKACKRL SIRCAPNILT IALKRFQGGR FGKLNKRISF
401: PETFDLGPYM SGGGEGSDVY KLYAVIVHLD MLNASFFGHY ICYVKDFRGN WYRIDDSEVE KVELEDVLSQ RAYMLLYSRV QPRPSNLRSE ESQDEKKTDT
501: LNTESNQDGS VESSGVGTND TSVSSLCNGI ISHSEDPEYE KESSLSASVP VSEEGKEVDV KVDTVDSESN RSIDMEHDSG TDHQEEEANG KEDPTVENLA
601: VDSSCLDITT PSPSAATEFI PQENERSDTE SKPLEKEHSD TESNKPLEKE HLDSESKPLE KEHSDTEMID AQ

Arabidopsis Description

UBP19Ubiquitin carboxyl-terminal hydrolase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA1]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.