CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 7
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42751
KRH58850

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	KRH42751	AT4G13930.1	23232097
AT4G24560.1	KRH58850	AT4G13930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72452	Soybean	golgi, plasma membrane	88.61	89.38
KRH52893	Soybean	extracellular, golgi, vacuole	51.96	61.15
KRH62182	Soybean	golgi, vacuole	65.84	60.46
GSMUA_Achr10P...	Banana	golgi	19.43	45.11
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	52.44	44.73
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	16.08	43.52
AT4G24560.1	Thale cress	extracellular, golgi	41.15	42.66
CDY11021	Canola	golgi	41.15	42.62
Bra019219.1-P	Field mustard	golgi	40.96	42.29
CDX92643	Canola	golgi	40.96	42.25
CDY03441	Canola	golgi	40.67	41.95
GSMUA_Achr5P22990_001	Banana	vacuole	35.79	41.6
CDY34291	Canola	golgi	40.57	41.57
Bra013814.1-P	Field mustard	golgi	40.38	41.37
KRH74502	Soybean	golgi, plasma membrane, vacuole	35.79	40.35
KRH69660	Soybean	golgi	35.41	39.45
Zm00001d050489_P001	Maize	nucleus	16.94	38.73
GSMUA_Achr10P...	Banana	nucleus	14.93	38.42
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	26.99	38.26
GSMUA_Achr7P19010_001	Banana	nucleus	16.17	36.74
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	31.96	35.99
GSMUA_AchrUn_...	Banana	golgi, vacuole	34.45	35.54
OQU80649	Sorghum	nucleus	27.27	35.36
Os08t0478500-01	Rice	plastid	32.54	34.76
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	30.05	34.7
TraesCS7A01G282200.4	Wheat	plastid	32.63	34.48
Zm00001d020769_P005	Maize	nucleus	28.23	34.46
TraesCS7D01G280800.4	Wheat	plastid	32.44	34.17
TraesCS5B01G243400.1	Wheat	vacuole	29.95	34.17
TraesCS7B01G179000.2	Wheat	plastid	32.44	34.14
KRH15706	Soybean	golgi, plasma membrane, vacuole	23.64	33.88
KRH05330	Soybean	golgi, plasma membrane	23.83	33.79
OQU89635	Sorghum	vacuole	28.52	32.68
TraesCS5A01G246000.3	Wheat	vacuole	29.86	32.43
KRH52289	Soybean	golgi	22.2	31.61
KRH61621	Soybean	golgi	22.3	31.4
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	29.19	30.71
KRH72298	Soybean	cytosol, plastid	14.64	30.12
KRH21804	Soybean	endoplasmic reticulum, plasma membrane	26.7	28.18
KRH13569	Soybean	endoplasmic reticulum, plasma membrane	26.41	27.91
KRG97572	Soybean	nucleus	9.67	27.37
KRH59329	Soybean	nucleus	9.47	26.83
KRH43175	Soybean	nucleus	9.47	26.83
KRH31299	Soybean	nucleus	9.47	26.83
KRH15753	Soybean	nucleus	11.29	21.3
KRH05289	Soybean	nucleus	11.2	21.08
KRH43852	Soybean	nucleus	12.92	21.06
KRH13611	Soybean	nucleus	13.01	20.86
KRH03615	Soybean	cytosol	11.58	20.44
KRH20191	Soybean	plastid	11.39	20.03
KRH23933	Soybean	cytosol	10.33	19.96
KRH39864	Soybean	cytosol	10.05	19.74
KRH03060	Soybean	nucleus	15.6	18.05
KRH39541	Soybean	nucleus	12.06	17.05
KRH74417	Soybean	nucleus	11.48	16.6

Protein Annotations

EntrezGene:100782303	MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	EMBL:ACUP02009023	ncoils:Coil
EnsemblPlantsGene:GLYMA_14G181100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	GO:GO:0046872
UniProt:I1MAZ7	InterPro:IPR002893	InterPro:IPR028889	EnsemblPlants:KRH16837	ProteinID:KRH16837	ProteinID:KRH16837.1
PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865
PANTHER:PTHR45492	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	TMHMM:TMhelix
UniParc:UPI000233BF63	InterPro:USP_CS	InterPro:USP_dom	InterPro:Znf_MYND	SEG:seg	:

Description

hypothetical protein

Coordinates

chr14:+:44391151..44397854

Molecular Weight (calculated)

113853.0 Da

IEP (calculated)

6.954

GRAVY (calculated)

-0.468

Length

1045 amino acids

Sequence
(BLAST)

0001: MRVTIDLGFW SLVVVAVVGL IVPAIAFVVR RQCQRAAARA EEIKRLLVLA EEESVRAESE SEASVYQQNG IVSAPPKNKV CAVCYSPTTT RCARCKAVHY
0101: CSGKCQIVHW RQGHKDKCHP PSPTCQTEDL VSDLGKKVAE PDYRGIHDEK SQTKSTEYAT SSEKPPLSDM RCSPDISRAK DDSVRVESLQ EGNVTGSNSE
0201: LSSNSFSGFS ASTGASESSD DSSVCESVTS NEYERCEGHN FVDPTNDISD TTSSRNSIGE SIPLSPKFAS LVDSVDGYPA MHKLNQVRPA FGKEESKLTS
0301: NGSSGLRIRK GAAIEPSTVS SGFWNTTRDS TRIKDGSNSE PLSSHSDDSA PKSVNNMPCA RSASSENEGD SLGCADALSI HNLQTVGSRV SNHVINPGST
0401: LKSSESRCLP HAVADTKLVS RTEEHSHYST KGGNNGILSG TATSNSKNDL KTSVLKVSGQ LRGSRLSKPF PSAVGSYITG KYSDKGLFPY DLFVKLYNWN
0501: RVELEPFGLI NCGNSCYANA VLQCLAFTPP LTAYLLQGLH SKSCANKKWC FTCEFESLIL KSKDTNSPIS PVGILSQLQN IGSQLGNGRE EDAHEFLRLA
0601: VETMQSVCLM ESGDNMSDSL KEETNLMGLT FGGYLQSKIK CMKCGGKSEC QERMMDLTVE IEGEITTLEE ALQQFTSAET LDGENKYHCV RCKSYEKAKK
0701: KMTVSEAPNV LTIALKRFQS GKFGKLNKPI RFPEILDLAP FMSGTSDLPI YRLYGVVVHL DIMNAAFSGH YVCYVKNFQS RWFKVDDSVV TAVELESVLA
0801: KGAYMLFYAR CSPRAPRLIR NSIVSSDSKW KLKGKTATMK LRRLPTGAGV NLTSPDGSPS LDTLYLKFLH PKMILEDDSS SDNSSLISSN SDEGSCSTDS
0901: TSDSTGTDDF ADYIFSDAGR GAGGILRNSD SSISPALSSS PHSRYFPSSD IDHDSVVLPH STGFQPSPSD GLLYRNRVVD VKRSGGGVFH FHPDTNIEHR
1001: KLDTTTSRSN CSSFRDTDSV QRAGSNHFND RNSGVSYTNS RDRTD

Best Arabidopsis Sequence Match ( AT4G24560.1 )
(BLAST)

0001: MLLVLDLGIS SLVLVVSLVL PLIGLFVRHK WRVAAQRREE IRRLLIHASE EAARAELEAS VEFSSVAVSN VFHCPVCYCL ATTRCSRCKA VRYCSGKCQI
0101: IHWRQGHKDE CHPASIVYDS EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL IDKEEAVSVA ETSGSSFSGF
0201: SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR
0301: HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI
0401: SSSTDALSPL DSSNLSHVTL PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA VVQHINSLHG RSGLKASVLK
0501: VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE
0601: KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD
0701: ISTLDDALRR FTRTEILDGE NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG GSEKSHDYKL YGVIVHLDVM
0801: NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR
0901: SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH
1001: QLPLGGER

Arabidopsis Description

UBP16Ubiquitin carboxyl-terminal hydrolase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB51]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.