CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42751
KRH58850

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	KRH42751	AT4G13930.1	23232097
AT4G24560.1	KRH58850	AT4G13930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16837	Soybean	golgi	89.38	88.61
KRH52893	Soybean	extracellular, golgi, vacuole	51.45	60.02
KRH62182	Soybean	golgi, vacuole	65.06	59.23
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	52.61	44.49
GSMUA_Achr10P...	Banana	golgi	18.92	43.56
AT4G24560.1	Thale cress	extracellular, golgi	42.08	43.25
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	16.02	43.01
CDY11021	Canola	golgi	41.6	42.72
CDX92643	Canola	golgi	41.6	42.55
Bra019219.1-P	Field mustard	golgi	41.22	42.19
CDY34291	Canola	golgi	41.31	41.96
CDY03441	Canola	golgi	40.93	41.86
Bra013814.1-P	Field mustard	golgi	41.12	41.76
GSMUA_Achr5P22990_001	Banana	vacuole	36.2	41.71
KRH74502	Soybean	golgi, plasma membrane, vacuole	35.81	40.02
KRH69660	Soybean	golgi	36.1	39.87
GSMUA_Achr10P...	Banana	nucleus	15.25	38.92
Zm00001d050489_P001	Maize	nucleus	16.89	38.29
GSMUA_Achr7P19010_001	Banana	nucleus	16.6	37.39
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	26.25	36.91
GSMUA_AchrUn_...	Banana	golgi, vacuole	34.65	35.44
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	31.37	35.02
OQU80649	Sorghum	nucleus	26.74	34.37
KRH15706	Soybean	golgi, plasma membrane, vacuole	23.94	34.02
KRH05330	Soybean	golgi, plasma membrane	24.03	33.79
Zm00001d020769_P005	Maize	nucleus	27.8	33.64
Os08t0478500-01	Rice	plastid	31.76	33.64
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	29.25	33.48
TraesCS7A01G282200.4	Wheat	plastid	31.76	33.27
TraesCS7D01G280800.4	Wheat	plastid	31.76	33.17
TraesCS5B01G243400.1	Wheat	vacuole	29.25	33.08
TraesCS7B01G179000.2	Wheat	plastid	31.56	32.93
KRH61621	Soybean	golgi	22.97	32.08
KRH52289	Soybean	golgi	22.68	32.02
TraesCS5A01G246000.3	Wheat	vacuole	29.15	31.39
OQU89635	Sorghum	vacuole	27.61	31.36
KRH72298	Soybean	cytosol, plastid	14.58	29.72
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	28.28	29.51
KRH21804	Soybean	endoplasmic reticulum, plasma membrane	27.8	29.09
KRH13569	Soybean	endoplasmic reticulum, plasma membrane	27.51	28.82
KRG97572	Soybean	nucleus	9.65	27.1
KRH59329	Soybean	nucleus	9.46	26.56
KRH43175	Soybean	nucleus	9.46	26.56
KRH31299	Soybean	nucleus	9.46	26.56
KRH43852	Soybean	nucleus	13.32	21.53
KRH13611	Soybean	nucleus	13.42	21.32
KRH15753	Soybean	nucleus	11.2	20.94
KRH05289	Soybean	nucleus	11.1	20.72
KRH03615	Soybean	cytosol	11.68	20.44
KRH20191	Soybean	plastid	11.68	20.37
KRH39864	Soybean	cytosol	10.14	19.74
KRH23933	Soybean	cytosol	10.23	19.59
KRH03060	Soybean	nucleus	15.64	17.94
KRH39541	Soybean	nucleus	12.16	17.05
KRH74417	Soybean	nucleus	11.58	16.6

Protein Annotations

EntrezGene:100815856	MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	EMBL:ACUP02001212	ncoils:Coil
EnsemblPlantsGene:GLYMA_02G213400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	GO:GO:0046872	UniProt:I1JGZ3	InterPro:IPR002893	InterPro:IPR028889
EnsemblPlants:KRH72452	ProteinID:KRH72452	ProteinID:KRH72452.1	PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972
ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865	PANTHER:PTHR45492	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF144232	SUPFAM:SSF54001	TMHMM:TMhelix	UniParc:UPI0002337424	InterPro:USP_CS	InterPro:USP_dom
InterPro:Znf_MYND	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:39946397..39953148

Molecular Weight (calculated)

113662.0 Da

IEP (calculated)

6.896

GRAVY (calculated)

-0.400

Length

1036 amino acids

Sequence
(BLAST)

0001: MRVTIDLGFW SLVLVAVVGL SVPAVAFFVR HGCRRTAARA EEIKRLLVLA NEESVRAETE TEALYYHQYR VVSGELPRDK VCAVCYSPTT TRCARCKAVH
0101: YCSGKCQIVH WRQDHKDKCH PPSPTCQTED LVSDLGKKVA EPDYRGVHDE KSQIKSREYA TSSDKPLLSD MRCSPDISCA RDDSVRVESL QEGNVTGSNS
0201: ELSSNSFSGF SASTGASESS DDSSVCESVT SNEHERCEGH IFVDPTIDIF YTTCNSIGES IPLSPKFASL VDLVDGNPAM HKLNQIRPDF SKQESKLTLN
0301: GSSGLCMWKG ATIEPITVSS GFWNTTLDST RIKDDSNSDP LASHYDDSAP KSVKNNMPCA RSASSENEGV GCADALSIHN LQTVGLRVSN HVINTGSTLK
0401: SAQSRCLPHA FADTKLVSRT EEHSHYSTKC GNNGIIQSGS ATSNSKNDLK TSVLKVSDQL RGSKLSKPFP SAVGSDITGK YSDKGLFPYD LFVKLYNWNR
0501: VELQPFGLIN CGNSCYANAV LQCLAVTPPL TAYLLQGLHS KSCANKKWCF TCEFESLILK SKDTNSPMSP LGILSQLQNI GSQLGNGREE DAHEFLRLVV
0601: ETMQSVCLME SGDNMSDSLK EETNLMGLTF GGYLQSKIKC MKCGGKSERQ ERMMDLTVEI EGEIATLEEA LRQFTSAETL DGENKYRCVR CKSYEKAKKK
0701: MTVLEAPNVL TIALKRFQSG KFGKLNKPIR FPEILDLAPF MSGTSDLPIY RLYGVVVHLD IMNAAFSGHY VCYVKNFQSR WFKVDDSVVT AVELESVLAK
0801: GAYMLFYSRC SPRAPRLIRN SIVSSDSKWK LNGKTATMKS RRLSTGAGVN LTSPGGSASL DTLYSKFLHS KRILEEDSSS DNSSLISSNS DEGSCSTDST
0901: ADSTSTDDFA DYIFGDVGRG AGGMLRNSDS NICPALPSFP HSGYFPSSDI DQHDSVVLPH STGFQPSPSE EGLLYRNRVV DVKRSGGGVS HFHLDTNIEH
1001: RKLDTSSSSI SFRETDSVFN DRNSGVSCTK SRYRTD

Best Arabidopsis Sequence Match ( AT4G24560.1 )
(BLAST)

0001: MLLVLDLGIS SLVLVVSLVL PLIGLFVRHK WRVAAQRREE IRRLLIHASE EAARAELEAS VEFSSVAVSN VFHCPVCYCL ATTRCSRCKA VRYCSGKCQI
0101: IHWRQGHKDE CHPASIVYDS EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL IDKEEAVSVA ETSGSSFSGF
0201: SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR
0301: HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI
0401: SSSTDALSPL DSSNLSHVTL PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA VVQHINSLHG RSGLKASVLK
0501: VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE
0601: KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD
0701: ISTLDDALRR FTRTEILDGE NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG GSEKSHDYKL YGVIVHLDVM
0801: NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR
0901: SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH
1001: QLPLGGER

Arabidopsis Description

UBP16Ubiquitin carboxyl-terminal hydrolase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB51]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.