Subcellular Localization
min:
: max
Winner_takes_all: extracellular, golgi
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 6
- endoplasmic reticulum 5
- plasma membrane 4
- vacuole 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019219.1-P | Field mustard | golgi | 77.88 | 77.57 |
| CDY11021 | Canola | golgi | 77.48 | 77.4 |
| CDX92643 | Canola | golgi | 77.28 | 76.9 |
| CDY03441 | Canola | golgi | 76.69 | 76.31 |
| Bra013814.1-P | Field mustard | golgi | 77.08 | 76.18 |
| CDY34291 | Canola | golgi | 76.98 | 76.08 |
| KRH72452 | Soybean | golgi, plasma membrane | 43.25 | 42.08 |
| KRH52893 | Soybean | extracellular, golgi, vacuole | 36.41 | 41.33 |
| KRH16837 | Soybean | golgi | 42.66 | 41.15 |
| GSMUA_Achr10P... | Banana | golgi | 17.96 | 40.22 |
| AT5G65450.2 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, nucleus | 29.76 | 40.0 |
| KRH62182 | Soybean | golgi, vacuole | 44.94 | 39.81 |
| GSMUA_Achr7P19020_001 | Banana | endoplasmic reticulum, golgi | 15.18 | 39.64 |
| VIT_18s0001g07370.t01 | Wine grape | golgi, vacuole | 47.02 | 38.69 |
| GSMUA_Achr5P22990_001 | Banana | vacuole | 32.94 | 36.93 |
| GSMUA_Achr10P... | Banana | nucleus | 14.29 | 35.47 |
| Zm00001d050489_P001 | Maize | nucleus | 15.48 | 34.14 |
| GSMUA_Achr7P19010_001 | Banana | nucleus | 15.58 | 34.13 |
| HORVU5Hr1G069620.20 | Barley | cytosol, nucleus | 24.7 | 33.79 |
| AT4G31670.1 | Thale cress | endoplasmic reticulum, golgi | 20.83 | 33.28 |
| GSMUA_AchrUn_... | Banana | golgi, vacuole | 32.84 | 32.68 |
| Os08t0478500-01 | Rice | plastid | 30.95 | 31.9 |
| OQU80649 | Sorghum | nucleus | 25.5 | 31.89 |
| AT2G24640.1 | Thale cress | endoplasmic reticulum, vacuole | 21.13 | 31.7 |
| TraesCS5D01G252600.2 | Wheat | endoplasmic reticulum, vacuole | 28.27 | 31.49 |
| TraesCS5B01G243400.1 | Wheat | vacuole | 28.17 | 31.0 |
| TraesCS7A01G282200.4 | Wheat | plastid | 30.36 | 30.94 |
| TraesCS7B01G179000.2 | Wheat | plastid | 30.36 | 30.82 |
| Os09t0464400-00 | Rice | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 28.17 | 30.6 |
| TraesCS7D01G280800.4 | Wheat | plastid | 30.06 | 30.54 |
| Zm00001d020769_P005 | Maize | nucleus | 25.3 | 29.79 |
| TraesCS5A01G246000.3 | Wheat | vacuole | 27.98 | 29.31 |
| OQU89635 | Sorghum | vacuole | 26.19 | 28.95 |
| HORVU7Hr1G064340.3 | Barley | endoplasmic reticulum | 27.18 | 27.59 |
| AT1G17110.2 | Thale cress | endoplasmic reticulum, plasma membrane | 24.8 | 26.94 |
| AT2G22310.1 | Thale cress | nucleus | 8.93 | 24.66 |
| AT4G39910.1 | Thale cress | nucleus | 8.93 | 24.26 |
| AT5G10790.1 | Thale cress | cytosol | 11.41 | 20.65 |
| AT3G14400.1 | Thale cress | mitochondrion | 13.0 | 19.82 |
| AT4G30890.2 | Thale cress | cytosol | 10.32 | 18.87 |
| AT5G46740.1 | Thale cress | nucleus, plastid | 12.6 | 17.35 |
| AT4G17895.1 | Thale cress | nucleus | 11.9 | 17.27 |
| AT5G57990.1 | Thale cress | nucleus | 13.79 | 16.18 |
Protein Annotations
| MapMan:19.2.3.1.1.7 | Gene3D:3.30.60.180 | Gene3D:3.90.70.10 | EntrezGene:828558 | UniProt:A0A178V7D3 | ProteinID:AEE84926.1 |
| EMBL:AF302666 | ArrayExpress:AT4G24560 | EnsemblPlantsGene:AT4G24560 | RefSeq:AT4G24560 | TAIR:AT4G24560 | RefSeq:AT4G24560-TAIR-G |
| EnsemblPlants:AT4G24560.1 | TAIR:AT4G24560.1 | Unigene:At.2551 | MEROPS:C19.A07 | ProteinID:CAA23007.1 | ProteinID:CAB79366.1 |
| ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0006464 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0006950 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008234 | GO:GO:0008283 | GO:GO:0009056 |
| GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0036459 | GO:GO:0046872 |
| GO:GO:0048364 | GO:GO:0048366 | GO:GO:0048367 | GO:GO:1901000 | InterPro:IPR002893 | InterPro:IPR028889 |
| RefSeq:NP_567705.1 | ProteinID:OAP00903.1 | PFAM:PF00443 | PFAM:PF01753 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00972 | PFscan:PS50235 | PFscan:PS50865 | PANTHER:PTHR45492 |
| InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | UniProt:Q9SB51 | SUPFAM:SSF144232 | SUPFAM:SSF54001 | TMHMM:TMhelix |
| Symbol:UBP16 | UniParc:UPI000009FEB7 | InterPro:USP_CS | InterPro:USP_dom | InterPro:Znf_MYND | SEG:seg |
Description
UBP16Ubiquitin carboxyl-terminal hydrolase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB51]
Coordinates
chr4:-:12679200..12684976
Molecular Weight (calculated)
110606.0 Da
IEP (calculated)
7.131
GRAVY (calculated)
-0.455
Length
1008 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLLVLDLGIS SLVLVVSLVL PLIGLFVRHK WRVAAQRREE IRRLLIHASE EAARAELEAS VEFSSVAVSN VFHCPVCYCL ATTRCSRCKA VRYCSGKCQI
0101: IHWRQGHKDE CHPASIVYDS EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL IDKEEAVSVA ETSGSSFSGF
0201: SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR
0301: HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI
0401: SSSTDALSPL DSSNLSHVTL PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA VVQHINSLHG RSGLKASVLK
0501: VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE
0601: KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD
0701: ISTLDDALRR FTRTEILDGE NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG GSEKSHDYKL YGVIVHLDVM
0801: NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR
0901: SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH
1001: QLPLGGER
0101: IHWRQGHKDE CHPASIVYDS EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL IDKEEAVSVA ETSGSSFSGF
0201: SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR
0301: HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI
0401: SSSTDALSPL DSSNLSHVTL PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA VVQHINSLHG RSGLKASVLK
0501: VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE
0601: KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD
0701: ISTLDDALRR FTRTEILDGE NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG GSEKSHDYKL YGVIVHLDVM
0801: NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR
0901: SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH
1001: QLPLGGER
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.