Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69375 | Canola | nucleus | 97.57 | 97.57 |
| CDY68864 | Canola | nucleus | 97.03 | 96.77 |
| Bra010647.1-P | Field mustard | nucleus | 97.03 | 96.77 |
| AT2G22310.1 | Thale cress | nucleus | 91.37 | 92.88 |
| VIT_07s0141g00230.t01 | Wine grape | nucleus | 90.3 | 90.79 |
| KRH59329 | Soybean | nucleus | 90.03 | 90.51 |
| CDY63898 | Canola | nucleus | 97.03 | 90.45 |
| KRH43175 | Soybean | nucleus | 89.76 | 90.24 |
| GSMUA_Achr10P... | Banana | cytosol | 83.29 | 89.57 |
| KRH31299 | Soybean | nucleus | 88.68 | 89.16 |
| KRG97572 | Soybean | nucleus | 88.68 | 89.16 |
| PGSC0003DMT400032703 | Potato | nucleus | 85.71 | 86.89 |
| GSMUA_Achr8P14390_001 | Banana | cytosol | 83.02 | 84.15 |
| HORVU4Hr1G078590.1 | Barley | cytosol | 82.21 | 83.33 |
| GSMUA_Achr7P19160_001 | Banana | mitochondrion | 68.46 | 83.28 |
| TraesCS4A01G406600.1 | Wheat | cytosol | 81.94 | 83.06 |
| TraesCS4B01G306100.1 | Wheat | cytosol | 81.94 | 83.06 |
| Os03t0190800-01 | Rice | cytosol | 81.67 | 82.79 |
| TraesCS4D01G304300.1 | Wheat | cytosol | 81.67 | 82.79 |
| Zm00001d028005_P001 | Maize | nucleus | 81.67 | 82.79 |
| TraesCS7D01G125700.1 | Wheat | nucleus | 81.4 | 82.51 |
| EER92723 | Sorghum | nucleus | 80.86 | 81.97 |
| GSMUA_Achr10P... | Banana | nucleus | 81.94 | 81.28 |
| Bra011823.1-P | Field mustard | nucleus | 96.5 | 81.18 |
| VIT_09s0070g00500.t01 | Wine grape | golgi, mitochondrion, nucleus, peroxisome | 75.74 | 78.49 |
| CDY68683 | Canola | endoplasmic reticulum, vacuole | 97.03 | 73.92 |
| AT4G30890.2 | Thale cress | cytosol | 25.07 | 16.88 |
| AT5G10790.1 | Thale cress | cytosol | 23.45 | 15.62 |
| AT3G14400.1 | Thale cress | mitochondrion | 26.95 | 15.13 |
| AT4G31670.1 | Thale cress | endoplasmic reticulum, golgi | 25.61 | 15.06 |
| AT2G24640.1 | Thale cress | endoplasmic reticulum, vacuole | 25.61 | 14.14 |
| AT4G17895.1 | Thale cress | nucleus | 25.88 | 13.81 |
| AT5G46740.1 | Thale cress | nucleus, plastid | 26.15 | 13.25 |
| AT5G65450.2 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, nucleus | 26.42 | 13.07 |
| AT5G57990.1 | Thale cress | nucleus | 25.07 | 10.83 |
| AT1G17110.2 | Thale cress | endoplasmic reticulum, plasma membrane | 26.68 | 10.67 |
| AT4G24560.1 | Thale cress | extracellular, golgi | 24.26 | 8.93 |
Protein Annotations
| MapMan:19.2.3.1.1.2 | Gene3D:3.90.70.10 | EntrezGene:830150 | ProteinID:AEE87136.1 | ArrayExpress:AT4G39910 | EnsemblPlantsGene:AT4G39910 |
| RefSeq:AT4G39910 | TAIR:AT4G39910 | RefSeq:AT4G39910-TAIR-G | EnsemblPlants:AT4G39910.1 | TAIR:AT4G39910.1 | Symbol:ATUBP3 |
| EMBL:AY058889 | EMBL:AY079044 | Unigene:At.24733 | MEROPS:C19.008 | ProteinID:CAB38904.1 | ProteinID:CAB80654.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 |
| GO:GO:0008234 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0036459 | InterPro:IPR028889 | RefSeq:NP_568074.1 | UniProt:O24454 | PFAM:PF00443 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00972 | ScanProsite:PS00973 | PFscan:PS50235 | PANTHER:PTHR43942 |
| PANTHER:PTHR43942:SF5 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SUPFAM:SSF54001 | EMBL:U76845 | UniParc:UPI000009D91A |
| InterPro:USP_CS | InterPro:USP_dom | SEG:seg | : | : | : |
Description
UBP3Ubiquitin carboxyl-terminal hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:O24454]
Coordinates
chr4:-:18511521..18514382
Molecular Weight (calculated)
42449.3 Da
IEP (calculated)
6.507
GRAVY (calculated)
-0.388
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTSNKS VADAEENLMT CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHE TSSSSSPEKI ANGLKVPQAN GVVHKEPIVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYIEQLGR YKKLSYRVVF PLELKLSNTV EPYADVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHE TSSSSSPEKI ANGLKVPQAN GVVHKEPIVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYIEQLGR YKKLSYRVVF PLELKLSNTV EPYADVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.