Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G078590.1 | Barley | cytosol | 98.91 | 98.91 |
| TraesCS4B01G306100.1 | Wheat | cytosol | 98.36 | 98.36 |
| TraesCS4D01G304300.1 | Wheat | cytosol | 98.09 | 98.09 |
| TraesCS7D01G125700.1 | Wheat | nucleus | 97.81 | 97.81 |
| Os03t0190800-01 | Rice | cytosol | 90.71 | 90.71 |
| Zm00001d028005_P001 | Maize | nucleus | 89.34 | 89.34 |
| EER92723 | Sorghum | nucleus | 89.34 | 89.34 |
| GSMUA_Achr10P... | Banana | cytosol | 80.33 | 85.22 |
| KRH59329 | Soybean | nucleus | 84.7 | 84.01 |
| KRH43175 | Soybean | nucleus | 84.7 | 84.01 |
| VIT_07s0141g00230.t01 | Wine grape | nucleus | 84.15 | 83.47 |
| KRH31299 | Soybean | nucleus | 84.15 | 83.47 |
| KRG97572 | Soybean | nucleus | 83.33 | 82.66 |
| CDY13770 | Canola | nucleus | 79.78 | 82.02 |
| PGSC0003DMT400032703 | Potato | nucleus | 81.97 | 81.97 |
| AT4G39910.1 | Thale cress | nucleus | 83.06 | 81.94 |
| AT2G22310.1 | Thale cress | nucleus | 81.42 | 81.64 |
| CDY68864 | Canola | nucleus | 82.79 | 81.45 |
| Bra010647.1-P | Field mustard | nucleus | 82.79 | 81.45 |
| Bra038533.1-P | Field mustard | nucleus | 78.96 | 81.41 |
| CDX69375 | Canola | nucleus | 82.24 | 81.13 |
| CDX76934 | Canola | nucleus | 78.14 | 80.79 |
| GSMUA_Achr8P14390_001 | Banana | cytosol | 79.51 | 79.51 |
| GSMUA_Achr7P19160_001 | Banana | mitochondrion | 66.12 | 79.34 |
| TraesCS2A01G340100.1 | Wheat | cytosol | 79.51 | 78.65 |
| GSMUA_Achr10P... | Banana | nucleus | 79.51 | 77.81 |
| CDY63898 | Canola | nucleus | 81.97 | 75.38 |
| VIT_09s0070g00500.t01 | Wine grape | golgi, mitochondrion, nucleus, peroxisome | 72.4 | 74.02 |
| Bra011823.1-P | Field mustard | nucleus | 81.42 | 67.57 |
| TraesCS6A01G203500.1 | Wheat | nucleus, plastid | 71.04 | 63.73 |
| CDY68683 | Canola | endoplasmic reticulum, vacuole | 82.79 | 62.22 |
| TraesCS2A01G516100.1 | Wheat | mitochondrion | 24.32 | 24.05 |
| TraesCS1A01G329200.2 | Wheat | plastid | 26.78 | 15.1 |
| TraesCS6A01G264800.1 | Wheat | nucleus | 25.68 | 12.81 |
| TraesCS2A01G127200.3 | Wheat | cytosol | 25.41 | 12.43 |
| TraesCS7A01G147900.1 | Wheat | nucleus | 27.6 | 10.97 |
| TraesCS6A01G192600.1 | Wheat | plasma membrane | 28.14 | 10.51 |
| TraesCS1A01G192900.1 | Wheat | cytosol | 19.13 | 10.45 |
| TraesCS7A01G282200.4 | Wheat | plastid | 27.6 | 10.21 |
| TraesCS5A01G246000.3 | Wheat | vacuole | 26.23 | 9.98 |
| TraesCS6A01G357500.1 | Wheat | mitochondrion, nucleus | 27.87 | 9.52 |
| TraesCS7A01G498400.1 | Wheat | extracellular, golgi, plasma membrane | 26.5 | 9.15 |
Protein Annotations
| MapMan:19.2.3.1.1.2 | Gene3D:3.90.70.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0036459 | InterPro:IPR028889 | PFAM:PF00443 | ScanProsite:PS00972 | ScanProsite:PS00973 |
| PFscan:PS50235 | PANTHER:PTHR43942 | PANTHER:PTHR43942:SF8 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SUPFAM:SSF54001 |
| EnsemblPlantsGene:TraesCS4A01G406600 | EnsemblPlants:TraesCS4A01G406600.1 | InterPro:USP_CS | InterPro:USP_dom | TIGR:cd02663 | : |
Description
No Description!
Coordinates
chr4A:-:679274336..679277205
Molecular Weight (calculated)
41954.6 Da
IEP (calculated)
6.349
GRAVY (calculated)
-0.525
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAASSRLEK ALGEQFPEGE RYFGLENFGN TCYCNSVLQA LYFCVPFREQ LLEYYANNKS ASDGEENMLT CLADLFSQIS NQKKKTGVIA PKRFIQRLKK
101: QNELFRSYMH QDAHEFLNFL LNELVDILEK ECKANKEPSQ NSSSNKTSNG PSNGQPNGSH KEPDTTWVHK CFQGILTNQT KCLRCETVTD RDETFLDLSL
201: DIEQNSSITS CLKNFSSTET LNAEDKFFCD KCCSLQEAQK RMKIKKQPNI LVIHLKRFKY IEQLGRYKKL TYRVVFPLEL KLMNTVDNSD LEYSLFAVLV
301: HVGSGPNHGH YISVVKSHNH WLFFDDETVE MTDESMVQTF FGSVQEFSGN TDNGYILFYE SVAKTS
101: QNELFRSYMH QDAHEFLNFL LNELVDILEK ECKANKEPSQ NSSSNKTSNG PSNGQPNGSH KEPDTTWVHK CFQGILTNQT KCLRCETVTD RDETFLDLSL
201: DIEQNSSITS CLKNFSSTET LNAEDKFFCD KCCSLQEAQK RMKIKKQPNI LVIHLKRFKY IEQLGRYKKL TYRVVFPLEL KLMNTVDNSD LEYSLFAVLV
301: HVGSGPNHGH YISVVKSHNH WLFFDDETVE MTDESMVQTF FGSVQEFSGN TDNGYILFYE SVAKTS
001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTSNKS VADAEENLMT CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHE TSSSSSPEKI ANGLKVPQAN GVVHKEPIVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYIEQLGR YKKLSYRVVF PLELKLSNTV EPYADVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHE TSSSSSPEKI ANGLKVPQAN GVVHKEPIVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYIEQLGR YKKLSYRVVF PLELKLSNTV EPYADVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K
Arabidopsis Description
UBP3Ubiquitin carboxyl-terminal hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:O24454]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.