Factsheet for Zm00001d028005_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92723	Sorghum	nucleus	98.36	98.36
Os03t0190800-01	Rice	cytosol	91.53	91.53
HORVU4Hr1G078590.1	Barley	cytosol	89.89	89.89
TraesCS4B01G306100.1	Wheat	cytosol	89.62	89.62
TraesCS4D01G304300.1	Wheat	cytosol	89.34	89.34
TraesCS4A01G406600.1	Wheat	cytosol	89.34	89.34
TraesCS7D01G125700.1	Wheat	nucleus	89.07	89.07
GSMUA_Achr10P...	Banana	cytosol	82.51	87.54
VIT_07s0141g00230.t01	Wine grape	nucleus	84.97	84.28
KRH31299	Soybean	nucleus	84.7	84.01
KRH59329	Soybean	nucleus	84.7	84.01
KRH43175	Soybean	nucleus	84.43	83.74
CDY13770	Canola	nucleus	81.15	83.43
KRG97572	Soybean	nucleus	83.88	83.2
Bra038533.1-P	Field mustard	nucleus	80.6	83.1
PGSC0003DMT400032703	Potato	nucleus	82.79	82.79
AT2G22310.1	Thale cress	nucleus	82.24	82.47
CDX76934	Canola	nucleus	79.23	81.92
GSMUA_Achr8P14390_001	Banana	cytosol	81.69	81.69
AT4G39910.1	Thale cress	nucleus	82.79	81.67
CDY68864	Canola	nucleus	82.79	81.45
Bra010647.1-P	Field mustard	nucleus	82.79	81.45
Zm00001d003476_P002	Maize	cytosol	81.42	80.98
CDX69375	Canola	nucleus	81.97	80.86
Zm00001d025570_P003	Maize	nucleus	80.6	80.16
GSMUA_Achr7P19160_001	Banana	mitochondrion	66.67	80.0
GSMUA_Achr10P...	Banana	nucleus	79.78	78.07
CDY63898	Canola	nucleus	81.69	75.13
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	73.22	74.86
Bra011823.1-P	Field mustard	nucleus	81.15	67.35
Zm00001d016918_P001	Maize	plastid	72.13	63.31
CDY68683	Canola	endoplasmic reticulum, vacuole	82.79	62.22
Zm00001d000312_P002	Maize	plastid	18.85	24.56
Zm00001d002086_P001	Maize	plastid	26.5	17.23
Zm00001d051513_P001	Maize	nucleus	26.23	16.24
Zm00001d022414_P001	Maize	cytosol	24.32	16.12
Zm00001d050489_P001	Maize	nucleus	17.76	14.22
Zm00001d047023_P001	Maize	nucleus	24.04	14.17
Zm00001d010710_P002	Maize	plastid	25.96	13.91
Zm00001d017686_P002	Maize	mitochondrion, nucleus	26.23	12.97
Zm00001d045104_P005	Maize	nucleus	28.14	11.41
Zm00001d020769_P005	Maize	nucleus	25.96	11.1
Zm00001d036707_P006	Maize	plasma membrane	27.32	10.44
Zm00001d053450_P066	Maize	endoplasmic reticulum, plasma membrane, vacuole	27.6	10.41
Zm00001d016165_P039	Maize	endoplasmic reticulum, plasma membrane, vacuole	27.87	10.14
Zm00001d007096_P007	Maize	mitochondrion	25.14	7.78
Zm00001d000313_P001	Maize	nucleus	6.28	6.22

Protein Annotations

EntrezGene:100274352	MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	UniProt:B4FU72	EMBL:BT040660	EMBL:BT042835
MEROPS:C19.008	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	ProteinID:ONL94458.1	ProteinID:ONL94459.1	PFAM:PF00443
ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR43942	PANTHER:PTHR43942:SF8	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI00017B7F18	InterPro:USP_CS	InterPro:USP_dom	EnsemblPlantsGene:Zm00001d028005
EnsemblPlants:Zm00001d028005_P001	EnsemblPlants:Zm00001d028005_T001	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase

Coordinates

chr1:-:20022494..20026685

Molecular Weight (calculated)

42171.9 Da

IEP (calculated)

5.974

GRAVY (calculated)

-0.459

Length

366 amino acids

Sequence
(BLAST)

001: MGAAGSRLEK ALGEQFPEGE RYFGLENFGN TCYCNSVLQA LYFCVPFRDQ LLEYYANNKN TGDVEENMLT CLADLFSQIS SQKKKTGVIA PKRFIQRLKK
101: QNEIFRSYMH QDAHEFLNFL LNELVDILEK EHNAARESLQ NLSLQKNSNG PIDGQPNGSH KELAVTWVHK CFQGILTNET RCLRCETVTD RDETFFDLSL
201: DIEQNSSLTS CLKNFSSTET LNAEDKFFCD KCCSLQEAQK RMKIKKPPNI LVIHLKRFKY IEQLQRYKKL SYRVVFPLEL KLLNTVDNSD LEYSLFAVVV
301: HVGSGPNHGH YISLVKSHNH WLFFDDENVE MTDESMVQAF FGSPQEFSGN TDNGYILFYE SLAERS

Best Arabidopsis Sequence Match ( AT4G39910.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTSNKS VADAEENLMT CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHE TSSSSSPEKI ANGLKVPQAN GVVHKEPIVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYIEQLGR YKKLSYRVVF PLELKLSNTV EPYADVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K

Arabidopsis Description

UBP3Ubiquitin carboxyl-terminal hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:O24454]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.