Factsheet for Zm00001d010710_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14400.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT3G14400.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT3G14400.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT3G14400.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT3G14400.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT3G14400.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT3G14400.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT3G14400.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000312_P002	Maize	plastid	35.72	86.83
KXG22316	Sorghum	plastid	84.19	84.93
Zm00001d000313_P001	Maize	nucleus	42.9	79.19
TraesCS1B01G342600.2	Wheat	plastid	61.93	65.48
TraesCS1D01G331300.1	Wheat	plastid	61.79	65.33
HORVU1Hr1G077630.2	Barley	plastid	61.93	65.18
TraesCS1A01G329200.2	Wheat	plastid	61.35	64.56
Os05t0510300-01	Rice	plastid	59.88	63.51
GSMUA_Achr9P10330_001	Banana	mitochondrion	47.14	51.69
VIT_19s0093g00560.t01	Wine grape	mitochondrion	38.21	41.1
KRH43852	Soybean	nucleus	38.07	40.56
KRH13611	Soybean	nucleus	38.07	39.88
PGSC0003DMT400071055	Potato	mitochondrion	35.14	38.84
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	38.65	38.48
AT3G14400.1	Thale cress	mitochondrion	35.29	36.46
CDX75770	Canola	mitochondrion, nucleus	33.82	34.79
Bra027341.1-P	Field mustard	mitochondrion	34.99	34.79
CDX98449	Canola	mitochondrion	34.7	33.66
CDX97571	Canola	mitochondrion	34.85	33.62
Zm00001d003476_P002	Maize	cytosol	14.2	26.36
Zm00001d025570_P003	Maize	nucleus	14.2	26.36
Zm00001d028005_P001	Maize	nucleus	13.91	25.96
Zm00001d016918_P001	Maize	plastid	14.49	23.74
Zm00001d051513_P001	Maize	nucleus	17.42	20.14
Zm00001d050489_P001	Maize	nucleus	12.15	18.16
Zm00001d002086_P001	Maize	plastid	14.35	17.41
Zm00001d047023_P001	Maize	nucleus	14.93	16.43
Zm00001d017686_P002	Maize	mitochondrion, nucleus	17.42	16.08
Zm00001d022414_P001	Maize	cytosol	12.74	15.76
Zm00001d045104_P005	Maize	nucleus	20.2	15.28
Zm00001d020769_P005	Maize	nucleus	18.16	14.49
Zm00001d036707_P006	Maize	plasma membrane	18.45	13.15
Zm00001d053450_P066	Maize	endoplasmic reticulum, plasma membrane, vacuole	18.45	12.99
Zm00001d016165_P039	Maize	endoplasmic reticulum, plasma membrane, vacuole	19.03	12.92
Zm00001d007096_P007	Maize	mitochondrion	13.18	7.61

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	UniProt:A0A1D6FSU9	ProteinID:AQK94646.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	PFAM:PF00443
ScanProsite:PS00972	PFscan:PS50235	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI00084448C7
InterPro:USP_CS	InterPro:USP_dom	EnsemblPlantsGene:Zm00001d010710	EnsemblPlants:Zm00001d010710_P002	EnsemblPlants:Zm00001d010710_T002	SEG:seg

Description

Ubiquitin carboxyl-terminal hydrolase 25

Coordinates

chr8:-:125242585..125262467

Molecular Weight (calculated)

75859.5 Da

IEP (calculated)

8.723

GRAVY (calculated)

-0.624

Length

683 amino acids

Sequence
(BLAST)

001: MAPTAEPSSR PPQWRPRTGP PPGLKNLGNT CYLNSVLQCL ASTPPLATFC LASRHSNQCK KVFPNRDNDC ALCVLERQIA RLLRADAGAL DSPAKVIRCM
101: PLFAEHFRWG RQEDAHEFLR YVVDACHTAD LRMRKGLRAA AASGNCGEDV RGQGVCLVMR ETFGGALLSQ VKCLECKGES NKTDEIMDIS LDLPGSSSVA
201: DALSRFFHPE TLDGANKYCC ERYAVLYLKR NKWFLDEGFN YDFGNVSCKK LTSARKQMFM LRAPKVLVIQ LKRFEGINGG KINRNIEFKE ALDLSDCMYN
301: KNQDPHPVYN LFGCIVHSGL SSESGHYYAY VKDVAIDQWF CCNDSHVSLS SSQNVLSEKV YILFYILNSK TQKPSRNGYS STAAKPFSTN GIGISSTSSS
401: ETSKIPLVKQ DGLCSTKGNV LMPLKNGKTA SGPLIKPIHF KNSAAEKVMS NGKVNLTSKN NPEVNGTAKS SESNRCKTGQ FVGPSKNNAD NTISCGERGQ
501: QSERIHDANG NGQSIHHSQY FGEISNGNAM PTSAQQETSH GNATPARQET NNSNGTPAQQ ETSNGKASHA EHYSERSSHQ EEHANFSGNK RRLEEDKFQE
601: MLAELANSEL RMSVWTDDVY SFMRSQKRRR IQSSDISQDF DAMRKQLVSD AARVCRSKVP ESLMENLIKR LRSYFEDKYP PKA

Best Arabidopsis Sequence Match ( AT3G14400.1 )
(BLAST)

001: MGFKLQMSWM PSLLSQKRRN GPPLGLRNLG NTCYLNSVLQ CLTFTPPLAN FCLTHKHSSH CDTYVDGERK RDCPFCIVEK RIARSLSVDL TTDAPNKISS
101: CLKIFAEHFK LGRQEDAHEF LRYVIDACHN TSLRLKKLRY NGNEPFNGNS VVKEIFGGAL QSQVKCLSCG AESNKADEIM DISLEILQSS SVKESLQKFF
201: QSEILDGNNK YRCESCEKLV TARKQMSILQ APNILVIQLK RFGGIFGGKI DKAISFGEIL VLSNFMSKAS KDPQPEYKLF GIIVHSGFSP ESGHYYAYVK
301: DSLGRWYCCN DSFVSLSTLQ EVLSEKAYIL FFSRSNQRPA SAKTLVTSNG TTSHEVNGCE TSNPQKFIGP LNGFNMKPQA EQSFQKGNLA SSKPHKFIRP
401: KPRAEQAPLE DNLLSSKVEK APLRPHAKVS ISVNLGAKRV SPVNGRLSFH QDENIAPKAN KENSVSVLPT KVNSGTERKF GTENGGNGVK ENGSAPGSSN
501: HKVALHPHER SNGSSNGGDH HKDNLHPCGS NGSQNGTAHP ETERNGVSTT QSKGLCSSTK EDPCILLRKD ESSRNELEAI KESLKKDALS HLRSCGWYDK
601: VLISMHAKKR LRTEQSGGED GSDLKRRLIE DVKSSLKSQI PEELKADLVN RIWEISKKKY S

Arabidopsis Description

UBP25Ubiquitin carboxyl-terminal hydrolase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.