CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14400.1	EES01073	AT2G42580.1	19000166
AT3G14400.1	EES02247	AT2G42580.1	19000166
AT3G14400.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000312_P002	Maize	plastid	37.81	91.1
Zm00001d010710_P002	Maize	plastid	84.93	84.19
Zm00001d000313_P001	Maize	nucleus	44.46	81.35
TraesCS1D01G331300.1	Wheat	plastid	64.4	67.49
TraesCS1B01G342600.2	Wheat	plastid	64.25	67.34
HORVU1Hr1G077630.2	Barley	plastid	64.4	67.18
TraesCS1A01G329200.2	Wheat	plastid	64.25	67.03
Os05t0510300-01	Rice	plastid	63.52	66.77
GSMUA_Achr9P10330_001	Banana	mitochondrion	48.45	52.65
VIT_19s0093g00560.t01	Wine grape	mitochondrion	38.85	41.42
KRH43852	Soybean	nucleus	39.0	41.19
KRH13611	Soybean	nucleus	38.85	40.34
PGSC0003DMT400071055	Potato	mitochondrion	35.6	39.0
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	39.14	38.63
AT3G14400.1	Thale cress	mitochondrion	36.48	37.37
CDX75770	Canola	mitochondrion, nucleus	35.3	35.99
Bra027341.1-P	Field mustard	mitochondrion	35.89	35.37
CDX97571	Canola	mitochondrion	35.45	33.9
CDX98449	Canola	mitochondrion	35.16	33.81
EER92723	Sorghum	nucleus	13.59	25.14
EES12269	Sorghum	cytosol	13.59	25.0
EES07024	Sorghum	mitochondrion	13.88	22.43
EES12962	Sorghum	plastid	14.18	16.99
OQU85579	Sorghum	nucleus	18.02	16.38
EER89337	Sorghum	nucleus	20.97	15.49
OQU80649	Sorghum	nucleus	17.58	14.76
OQU89635	Sorghum	vacuole	18.32	13.6
OQU92076	Sorghum	nucleus	17.13	13.39
OQU81355	Sorghum	cytosol, nucleus, plastid	1.48	12.82
OQU84698	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	18.17	12.73
KXG20513	Sorghum	golgi, plasma membrane	17.43	12.09
OQU90420	Sorghum	mitochondrion	12.7	11.67

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	UniProt:A0A1B6P9A4	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	EnsemblPlants:KXG22316	ProteinID:KXG22316
ProteinID:KXG22316.1	ProteinID:KXG22317.1	PFAM:PF00443	ScanProsite:PS00972	PFscan:PS50235	PANTHER:PTHR45511
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	EnsemblPlantsGene:SORBI_3009G192300	SUPFAM:SSF54001	UniParc:UPI0001C804DA	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:54411784..54420785

Molecular Weight (calculated)

74254.7 Da

IEP (calculated)

9.011

GRAVY (calculated)

-0.596

Length

677 amino acids

Sequence
(BLAST)

001: MAPTAEPSSP PPQRRPRTGP PPGLKNLGNT CYLNSVLQCL ASTPPLATFC LASRHSILCK KVFPNRDKEC AFCVLELQIA RLLRADAGAL DSPAKVIRCM
101: PLFAEHFRWG RQEDAHEFLR YVVDACHTAG LRIRKRLPAA GASGNCGEDG RAQAACLVMR ETFGGALLSQ VKCLVCKGES NKTDEIMDIS LDLPGSSSVA
201: DALARFFQPE ILEGANKYSC ERCKKLTSAR KQMFMLRAPK VLVIQLKRFE GINGGKINRN IEFKEILGLS DCMYNKNKNQ DPQPVYNLFG CIVHSGLSPE
301: SGHYYAYVKD SIGQWFCCND SHVSLSSSQN VLSEKVYILF YILNSKTQKP STNGYSSTAV KPFSTNGIGI SSTSSSETSK IPLVKQNGIC STKDNVLMPL
401: KNGKTASGPL IKPIHFKNSA AEKVMSNGKV NLTSKINPEV NETAKSSESN GYKTGQFAGP IKNNADNTIS CGERGQQSER ILQDANGNGQ PRTLQDANGN
501: DQPGHHSQYL GGTSNGNAMP AQQETSNGNA TPSQQETSNG NAMPTQQETS NGNATPAQQE ISNGKASHAE QYSDQSSHAN SSGNKRQFEE DKFQEMLAKS
601: ANSELRLSVW MDDVYNFMRS QKRRRIQSSD ISQDFDTMRK QLASDARIFR SKVPESLIDN LIKRLRSYFE GKYSPNA

Best Arabidopsis Sequence Match ( AT3G14400.1 )
(BLAST)

001: MGFKLQMSWM PSLLSQKRRN GPPLGLRNLG NTCYLNSVLQ CLTFTPPLAN FCLTHKHSSH CDTYVDGERK RDCPFCIVEK RIARSLSVDL TTDAPNKISS
101: CLKIFAEHFK LGRQEDAHEF LRYVIDACHN TSLRLKKLRY NGNEPFNGNS VVKEIFGGAL QSQVKCLSCG AESNKADEIM DISLEILQSS SVKESLQKFF
201: QSEILDGNNK YRCESCEKLV TARKQMSILQ APNILVIQLK RFGGIFGGKI DKAISFGEIL VLSNFMSKAS KDPQPEYKLF GIIVHSGFSP ESGHYYAYVK
301: DSLGRWYCCN DSFVSLSTLQ EVLSEKAYIL FFSRSNQRPA SAKTLVTSNG TTSHEVNGCE TSNPQKFIGP LNGFNMKPQA EQSFQKGNLA SSKPHKFIRP
401: KPRAEQAPLE DNLLSSKVEK APLRPHAKVS ISVNLGAKRV SPVNGRLSFH QDENIAPKAN KENSVSVLPT KVNSGTERKF GTENGGNGVK ENGSAPGSSN
501: HKVALHPHER SNGSSNGGDH HKDNLHPCGS NGSQNGTAHP ETERNGVSTT QSKGLCSSTK EDPCILLRKD ESSRNELEAI KESLKKDALS HLRSCGWYDK
601: VLISMHAKKR LRTEQSGGED GSDLKRRLIE DVKSSLKSQI PEELKADLVN RIWEISKKKY S

Arabidopsis Description

UBP25Ubiquitin carboxyl-terminal hydrolase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.