CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047023_P001	Maize	nucleus	52.66	73.43
TraesCS1D01G196500.1	Wheat	cytosol	27.14	41.67
TraesCS2B01G408400.1	Wheat	cytosol	19.4	38.98
TraesCS3B01G442400.1	Wheat	cytosol	26.67	37.14
TraesCS1B01G207800.1	Wheat	cytosol, nucleus, plastid	35.33	35.58
TraesCS1D01G196600.1	Wheat	nucleus	35.33	35.13
TraesCS1A01G192900.1	Wheat	cytosol	23.79	30.75
OQU85579	Sorghum	nucleus	22.29	25.91
EER92723	Sorghum	nucleus	10.51	24.86
EES12269	Sorghum	cytosol	10.28	24.18
EES07024	Sorghum	mitochondrion	11.2	23.15
PGSC0003DMT400096420	Potato	mitochondrion	3.58	20.81
EES12962	Sorghum	plastid	11.78	18.05
KXG22316	Sorghum	plastid	13.39	17.13
EER89337	Sorghum	nucleus	17.55	16.58
OQU81355	Sorghum	cytosol, nucleus, plastid	1.39	15.38
OQU80649	Sorghum	nucleus	13.05	14.02
OQU89635	Sorghum	vacuole	13.63	12.94
KXG20513	Sorghum	golgi, plasma membrane	14.09	12.5
OQU90420	Sorghum	mitochondrion	10.05	11.8
OQU84698	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	12.36	11.08
CDX87682	Canola	cytosol	0.12	3.03

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	UniProt:A0A1Z5S8B0	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	EnsemblPlants:OQU92076	ProteinID:OQU92076
ProteinID:OQU92076.1	PFAM:PF00443	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR43942	PANTHER:PTHR43942:SF3
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	EnsemblPlantsGene:SORBI_3001G287900	SUPFAM:SSF54001	UniParc:UPI000B8BB1EA	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:56392963..56402049

Molecular Weight (calculated)

97760.6 Da

IEP (calculated)

5.409

GRAVY (calculated)

-0.856

Length

866 amino acids

Sequence
(BLAST)

001: MGGGEDSEEE CLQGEFHESQ SVMGGGEDSE EECLQGEFHE AVESIEVLLS SLADNQKPYD MMGYIITEKN ECEQDRESLP EKKLYFQKKL PEVTVQALGH
101: LLEEEQPAMA ISDNSKESDK QIPPPSPCPS DEQQKPKDNG DLSDDSPNSS DHSDHSDGEH HYDIPIHSLY KYDPFRFMHG RERRNCGYSC SFSDRRNHWN
201: DGYPFMYGFR NLWNPMTSLH TDDHCCFKKN TDDHWSRWPS PEPDQRNERY NSRSCWSWPS PEPDCEKESY TVGAGLSNPH LWTCFLNCIL QCMVHTVPLV
301: LKLRKTDHPD PCPRASIGFC CYCSLKQHVN ESIRLSGSSF YPEIFINRLK SISSDFKSGV QQDAQEFLRC LLDKLDEDSI APRSSEESST TKEGSVVKEI
401: FRGCLKSQLR CPECDRCSDK SEPFLDLSLD LNMVETLMDA LQSFTNTELI KDFMCDGCKS RVSMEKHFKI EQAPEVLVIH LKRFTNSESK IWDKVKYPLE
501: LDINSFMSSS DDTLQKYDLY GVVEHLGAYG SGHYVCYIRS SEADWYKFND DKVYQCSVDS ALENAAYLLF YVKQGSSPWF STLLEKEDKC PLDGSVSLEE
601: QGKVALVNKE EEATSCHGQR NGPTLIDKEE EATSSHGQGN GPTLPDLSEQ LQRNGNGNTL SDASDELEEG FRLGETSTGT QGPSCLIGSD KNGHADGCWE
701: PSGKMKDVSP RGSLNRKEMK PSTCGSLEVD HAVTHGGSPR KNENNCHLLQ LSHKCKDNCD SLEVDHAVTQ GGSPRKNENY CHLLQLPHKR KDNCCHRNLS
801: LQGGGEEGRG RGGGQIKKRK SAAGVESKKR KSADGGESKA LRKRQKTKHR TVARQFALCW WKWQVQ

Best Arabidopsis Sequence Match ( AT4G17895.1 )
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Arabidopsis Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.