Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G207800.1 | Wheat | cytosol, nucleus, plastid | 91.04 | 92.21 |
| TraesCS1D01G196500.1 | Wheat | cytosol | 32.03 | 49.47 |
| Zm00001d047023_P001 | Maize | nucleus | 27.78 | 38.97 |
| OQU92076 | Sorghum | nucleus | 35.13 | 35.33 |
| TraesCS6D01G250100.1 | Wheat | nucleus | 22.04 | 25.98 |
| TraesCS4D01G304300.1 | Wheat | cytosol | 10.45 | 24.86 |
| TraesCS7D01G125700.1 | Wheat | nucleus | 10.33 | 24.59 |
| PGSC0003DMT400096420 | Potato | mitochondrion | 3.9 | 22.82 |
| TraesCS6D01G187000.1 | Wheat | nucleus, plastid | 10.33 | 22.06 |
| TraesCS2D01G517600.1 | Wheat | mitochondrion | 9.18 | 21.62 |
| TraesCS1D01G331300.1 | Wheat | plastid | 13.2 | 17.8 |
| TraesCS7D01G149800.1 | Wheat | nucleus | 16.3 | 15.15 |
| TraesCS6D01G339500.1 | Wheat | nucleus | 15.84 | 13.36 |
| TraesCS5D01G252600.2 | Wheat | endoplasmic reticulum, vacuole | 13.43 | 12.93 |
| TraesCS7D01G280800.4 | Wheat | plastid | 13.78 | 12.1 |
| TraesCS6D01G179700.1 | Wheat | plasma membrane | 13.09 | 11.67 |
| TraesCS7D01G485600.1 | Wheat | golgi, plasma membrane | 13.89 | 11.36 |
| TraesCS2D01G129600.2 | Wheat | cytosol | 9.07 | 10.25 |
| CDX87682 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.90.70.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0036459 | InterPro:IPR028889 | PFAM:PF00443 | ScanProsite:PS00973 | PFscan:PS50235 |
| PANTHER:PTHR43942 | PANTHER:PTHR43942:SF3 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SUPFAM:SSF54001 | EnsemblPlantsGene:TraesCS1D01G196600 |
| EnsemblPlants:TraesCS1D01G196600.1 | InterPro:USP_CS | InterPro:USP_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1D:+:276525872..276530636
Molecular Weight (calculated)
97033.4 Da
IEP (calculated)
4.695
GRAVY (calculated)
-0.830
Length
871 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRPEEEREQ PPHAADAPVD PMTAPPPPPP LEEEEEEQQQ LGKRPTTAAD ALVAPMPPPL PPSQPEEKQE EQPVPAAALP QPLESGPASA EEGHEETSQD
101: KNPFKVPGPA AEGQEETSQD KNPFKVPDPA DEVEKETSQD KNPIKVPGPA DEEDKETRGD KSPFKVPGLA DEGDWQTCRD RKLLRIMGRA DERYKGIGQG
201: RRPEDDDSED SCGCSHYRRS HFWYPHEQRD PRYYDHELHC GGFCQNCCPN WHHSALHLGN GYPDRYGYPG HPHRGYGYPV GRFDQDCMDL YNSRLMDSWD
301: DKLVDTQCCS RYKLTRGKND FPVAASLSNP EKWICFLNCI LQCVVHTVPL VSKLLKDRHL GPCPSGSDEF CCYCSLRHHA SEVIRLSGDV LYPRKFVKRL
401: KSIFRDFEQG QHQDAHEFLR CLLDKLDEVT VSPRSESEEP SSIVKELFGG QLKSQLNCPK CKHCSDRLES FLDLNLEVNQ MDTIMDSLSS YTKIEVVEDF
501: ICDGCKSRVN MEKHLKVEQA PEVLVIQLKR FQNLGSDISK IHDMVKYQLE LDLNPFMSSP DDKPQCYDLY GVVEHWGNTA KGHYVCYIRS SETDWFLFDD
601: DKIVKMTEDR LLEKKAYVLF YVKKGSSPWF STLLEKKEMF LSDYFEELAG KGLDEDGASK AGSYSSSGSD SDNGSVEQDV TEHFFGPAEK NEAGPSSAGL
701: SQGVQGIENG STLCSVPDKN EVGCSLGGVP SGGTQKPTSL TLSSVENGDA SGLPLLLENK EKSSHGTREA NHNGPSSEVL DADSHIGSSQ ENGRSCNLLQ
801: SSSHKHEDYC PENLTLHKEE EEEEEEDGMV GSCDSPAGSL HARGSAGTSR LRTVGSNSDR TTNGECNTKF I
101: KNPFKVPGPA AEGQEETSQD KNPFKVPDPA DEVEKETSQD KNPIKVPGPA DEEDKETRGD KSPFKVPGLA DEGDWQTCRD RKLLRIMGRA DERYKGIGQG
201: RRPEDDDSED SCGCSHYRRS HFWYPHEQRD PRYYDHELHC GGFCQNCCPN WHHSALHLGN GYPDRYGYPG HPHRGYGYPV GRFDQDCMDL YNSRLMDSWD
301: DKLVDTQCCS RYKLTRGKND FPVAASLSNP EKWICFLNCI LQCVVHTVPL VSKLLKDRHL GPCPSGSDEF CCYCSLRHHA SEVIRLSGDV LYPRKFVKRL
401: KSIFRDFEQG QHQDAHEFLR CLLDKLDEVT VSPRSESEEP SSIVKELFGG QLKSQLNCPK CKHCSDRLES FLDLNLEVNQ MDTIMDSLSS YTKIEVVEDF
501: ICDGCKSRVN MEKHLKVEQA PEVLVIQLKR FQNLGSDISK IHDMVKYQLE LDLNPFMSSP DDKPQCYDLY GVVEHWGNTA KGHYVCYIRS SETDWFLFDD
601: DKIVKMTEDR LLEKKAYVLF YVKKGSSPWF STLLEKKEMF LSDYFEELAG KGLDEDGASK AGSYSSSGSD SDNGSVEQDV TEHFFGPAEK NEAGPSSAGL
701: SQGVQGIENG STLCSVPDKN EVGCSLGGVP SGGTQKPTSL TLSSVENGDA SGLPLLLENK EKSSHGTREA NHNGPSSEVL DADSHIGSSQ ENGRSCNLLQ
801: SSSHKHEDYC PENLTLHKEE EEEEEEDGMV GSCDSPAGSL HARGSAGTSR LRTVGSNSDR TTNGECNTKF I
001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT
Arabidopsis Description
UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.