Factsheet for Zm00001d047023_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92076	Sorghum	nucleus	73.43	52.66
TraesCS1D01G196500.1	Wheat	cytosol	35.1	38.65
TraesCS2B01G408400.1	Wheat	cytosol	26.41	38.05
TraesCS3B01G442400.1	Wheat	cytosol	33.33	33.28
TraesCS1B01G207800.1	Wheat	cytosol, nucleus, plastid	39.45	28.49
Zm00001d000312_P002	Maize	plastid	12.88	28.47
TraesCS1D01G196600.1	Wheat	nucleus	38.97	27.78
Zm00001d051513_P001	Maize	nucleus	26.41	27.75
TraesCS1A01G192900.1	Wheat	cytosol	29.79	27.61
Zm00001d028005_P001	Maize	nucleus	14.17	24.04
Zm00001d003476_P002	Maize	cytosol	13.85	23.37
Zm00001d025570_P003	Maize	nucleus	13.69	23.1
Zm00001d017686_P002	Maize	mitochondrion, nucleus	27.38	22.97
Zm00001d016918_P001	Maize	plastid	13.69	20.38
PGSC0003DMT400096420	Potato	mitochondrion	4.35	18.12
Zm00001d002086_P001	Maize	plastid	15.78	17.41
Zm00001d010710_P002	Maize	plastid	16.43	14.93
Zm00001d022414_P001	Maize	cytosol	13.04	14.67
Zm00001d045104_P005	Maize	nucleus	21.26	14.62
Zm00001d050489_P001	Maize	nucleus	10.31	14.0
Zm00001d020769_P005	Maize	nucleus	17.39	12.62
Zm00001d036707_P006	Maize	plasma membrane	17.23	11.17
Zm00001d053450_P066	Maize	endoplasmic reticulum, plasma membrane, vacuole	15.46	9.9
Zm00001d016165_P039	Maize	endoplasmic reticulum, plasma membrane, vacuole	15.62	9.64
Zm00001d007096_P007	Maize	mitochondrion	13.2	6.93
Zm00001d000313_P001	Maize	nucleus	4.03	6.76
CDX87682	Canola	cytosol	0.16	3.03

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	UniProt:A0A1D6P656	ProteinID:AQL05395.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	PFAM:PF00443
ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR43942	PANTHER:PTHR43942:SF3	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF54001	UniParc:UPI00084351E4	InterPro:USP_CS	InterPro:USP_dom	EnsemblPlantsGene:Zm00001d047023	EnsemblPlants:Zm00001d047023_P001
EnsemblPlants:Zm00001d047023_T001	SEG:seg	:	:	:	:

Description

Putative ubiquitin carboxyl-terminal hydrolase superfamily protein

Coordinates

chr9:-:115639480..115648660

Molecular Weight (calculated)

70444.0 Da

IEP (calculated)

6.344

GRAVY (calculated)

-0.615

Length

621 amino acids

Sequence
(BLAST)

001: MADEDAAETV GAAYMTVPPP LVMPDAAVPP PVAAETVATL PPVSDDDTEA AVAAMLVVLL PPPPEQMVAI PQPFSSESKL PEVTVQALGH LLEEEHPVMA
101: VSDNKESEKQ IPRPPPCPSG EQQKPKDDGD LSDDSPSNST NQSDHIDGEH HYNIPIYRPY KYDPYRFMCR RERRNHWNDD YPYMCGFQNP WNPKTSLHTD
201: DYWSPWPSPE PDQRMERYNS GSCWSWPSPE PDCEKERYTV AAGLSNPHLW TCFLNCVLQC MVHTVPLLLK LRKADHPDPC PRKVSSVSIG FCCYCSLKHH
301: VDECMRLSGS SFYPEIFVNH LKSISSNFRS GVQQDAQEFL RCLLDKLDED SIAPRFSEES SSSEESSSTE EGSVVKEIFS GCLKSQLRCP ECNHYSDKSE
401: PFLDLSLDLN MVETLMDALQ SFTNTELIKD FMCDGCKSRV NLEKHFKIEQ APEVLVIHLK RFTNFESKIR DKTLQKYDLY GVVEHLGAYG SGHYVCYIRS
501: SEADWYKFND DKAREFTCSV QVCKCSVASA LDSAAYLLFY VKQGSSPWFS TLLEKEDKCC GEERRGRGGG ESKKRKSANG GRSKALRKRM KRTHRTVARH
601: FAFCRWRAVA GTVWKSKTRR R

Best Arabidopsis Sequence Match ( AT5G46740.1 )
(BLAST)

001: MAEFSDPPPS NLSSSHKLTK PNQTLDESSP TAPIRDLVTN SLSLSSPIRQ IQALSPAKPD GSSSSPPDKT LNFNPEENRD VNPDESSSSP SDKTLIAPPA
101: QISPVSNNNH LRITNTSDSY LYRPPRRYIE YESDDDELNK MEPTKPLQLS WWYPRIEPTG VGAGLYNSGN TCFIASVLQC FTHTVPLIDS LRSFMYGNPC
201: NCGNEKFCVM QALRDHIELA LRSSGYGINI DRFRDNLTYF SSDFMINHQE DAHEFLQSFL DKLERCCLDP KNQLGSVSSQ DLNIVDNVFG GGLMSTLCCC
301: NCNSVSNTFE PSLGWSLEIE DVNTLWKALE SFTCVEKLED QLTCDNCKEK VTKEKQLRFD KLPPVATFHL KRFTNDGVTM EKIFDHIEFP LELDLSPFMS
401: SNHDPEVSTR YHLYAFVEHI GIRATFGHYS SYVRSAPETW HNFDDSKVTR ISEERVLSRP AYILFYAREG TPWFSSTFEQ LKTVFEATPL HFSPVSVLDN
501: SYESVDNSSK ACNDSVGVSI PDVKWPDSCC QEPKEEVFHS AESSNNEDSS AMIDALGSPQ SEKPFAETSQ QTEPESCPTE NKAYIDKSEK PFAETSQPKE
601: PKPFADRASI DAPLLKVQNQ DISPKRKAGE RATLGGPKLK YQKPNSHQKR QGTFQIQRAH LQTKKQEESR KTKRPLFRSN VAASAPDPKY KNHALSYLNR
701: AQTPRARKLA NALSDSPTKK KKSSNMRRSI KL

Arabidopsis Description

UBP21Ubiquitin carboxyl-terminal hydrolase 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIQ1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.