Factsheet for Zm00001d050489_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009738_P001
Zm00001d040457_P001
Zm00001d049234_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	Zm00001d040457_P001	AT4G13930.1	23232097
AT4G24560.1	Zm00001d049234_P001	AT4G13930.1	23232097
AT4G24560.1	Zm00001d009738_P001	AT4G37930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	44.64	50.25
OQU80649	Sorghum	nucleus	86.87	49.26
GSMUA_Achr7P19010_001	Banana	nucleus	46.39	46.09
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	69.58	32.02
TraesCS7B01G179000.2	Wheat	plastid	69.37	31.92
TraesCS7D01G280800.4	Wheat	plastid	69.15	31.85
TraesCS7A01G282200.4	Wheat	plastid	68.71	31.75
Os08t0478500-01	Rice	plastid	66.52	31.08
Zm00001d020769_P005	Maize	nucleus	50.11	26.75
GSMUA_Achr5P22990_001	Banana	vacuole	43.33	22.02
VIT_00s0199g00030.t01	Wine grape	vacuole	40.92	20.71
AT5G65450.2	Thale cress	endoplasmic reticulum, golgi, mitochondrion, nucleus	33.92	20.67
CDY08792	Canola	vacuole	32.39	19.76
CDY14564	Canola	golgi	32.39	19.42
Bra024386.1-P	Field mustard	golgi	32.39	19.3
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	31.07	19.19
KRH69660	Soybean	golgi	38.95	18.98
Zm00001d003476_P002	Maize	cytosol	15.1	18.75
Zm00001d025570_P003	Maize	nucleus	15.1	18.75
KRH74502	Soybean	golgi, plasma membrane, vacuole	37.64	18.55
Zm00001d028005_P001	Maize	nucleus	14.22	17.76
KRH16837	Soybean	golgi	38.73	16.94
KRH72452	Soybean	golgi, plasma membrane	38.29	16.89
KRH62182	Soybean	golgi, vacuole	41.36	16.61
Zm00001d000312_P002	Maize	plastid	9.85	16.01
Solyc04g076210.2.1	Tomato	nucleus	38.29	15.92
CDY11021	Canola	golgi	34.79	15.76
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	42.23	15.76
Bra019219.1-P	Field mustard	golgi	34.57	15.61
CDX92643	Canola	golgi	34.35	15.5
AT4G24560.1	Thale cress	extracellular, golgi	34.14	15.48
CDY03441	Canola	golgi	33.7	15.2
Zm00001d016918_P001	Maize	plastid	13.79	15.11
Bra013814.1-P	Field mustard	golgi	33.7	15.1
CDY34291	Canola	golgi	33.7	15.1
Zm00001d053450_P066	Maize	endoplasmic reticulum, plasma membrane, vacuole	31.29	14.74
Zm00001d016165_P039	Maize	endoplasmic reticulum, plasma membrane, vacuole	31.95	14.51
KRH52893	Soybean	extracellular, golgi, vacuole	27.35	14.08
Zm00001d036707_P006	Maize	plasma membrane	27.57	13.15
Zm00001d051513_P001	Maize	nucleus	15.97	12.35
Zm00001d010710_P002	Maize	plastid	18.16	12.15
Zm00001d045104_P005	Maize	nucleus	23.63	11.96
Zm00001d022414_P001	Maize	cytosol	12.69	10.51
Zm00001d002086_P001	Maize	plastid	12.91	10.48
Zm00001d017686_P002	Maize	mitochondrion, nucleus	16.85	10.41
Zm00001d047023_P001	Maize	nucleus	14.0	10.31
Zm00001d000313_P001	Maize	nucleus	8.32	10.27
GSMUA_Achr10P...	Banana	golgi	4.81	4.89
Zm00001d007096_P007	Maize	mitochondrion	12.47	4.82
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	0.0	0.0

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.90.70.10	UniProt:A0A1D6Q1V9	ProteinID:AQK52600.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	PFAM:PF00443	PFscan:PS50235	PANTHER:PTHR45499
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI000221BBBB	InterPro:USP_dom	EnsemblPlantsGene:Zm00001d050489
EnsemblPlants:Zm00001d050489_P001	EnsemblPlants:Zm00001d050489_T001	SEG:seg	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase 17

Coordinates

chr4:+:92846870..92856560

Molecular Weight (calculated)

50075.9 Da

IEP (calculated)

6.870

GRAVY (calculated)

-0.695

Length

457 amino acids

Sequence
(BLAST)

001: MQSVCTKEAR KGGVLRSAEE TTLVQLIFGG YLRSKIKCSR CHVSSEQCEP MLDLTVEIDG DISSLDEALV RFTSTEALDG ENKYHCSRCK SYERAKKKLT
101: IEEAPNILTI ALKRYQSGKF GKISKAIRFP ETLNIVCYMN PDTDDISPVY SLYAVVVHHD VMNAAFSGHY VCYVKDTHGK WFKADDSQVK PVSLDNVMSK
201: CAYMLLYARC SPRAPSSVRQ AISDPARPKK AKQKVVPGGT TWRGGSFNRH QDGQRHSNHT ADDLTHAFDE YRNAPYSPSD SPSPSESSSL FSNSDAGSHS
301: TVSTDSSEST RNSTSTEEYE YVFGAADQMY PGGPMGGAPV ESDQMYPGGP MGGAPVESDY STYSRSRSSL NTSSSGRDAY SAASSADHKH QVVGSGGQVE
401: GDESTSLLYT DRSNQQLSSK LTDQYRQLDG SGHDPGETRG GVLLRRPSRD RTAQTFY

Best Arabidopsis Sequence Match ( AT1G17110.2 )
(BLAST)

001: MLEPRGADIP ILFLVLVVLP VVAYILLGKW SNISEKRVRA NLLAQMAAEE ALRAETVVNA DRGVRFESVA TENRAQRTRT KTVSAGGGAV RAEFDAGARE
101: TVAEQRSDSV TATCGVTVVA PVNNNELHVC ARCFGPAKTR CSRCKSVRYC SGKCQIIHWR VAHKDECVPV ESCSSSSERV SFEKDSVLYD HGMDSTMYSN
201: NTTQAAKGKT SKSSVDFASL GISQNDITPQ INTQGRKSVG KQHSSKANRE SCRRDSATVF DSSDEAASAG GDNKTSHIKH KSRGNSYAAE TNPRRHSVDS
301: SAVQMNGQSF VSGMQESHKH ENNLGVRSSF GCPNTQYPSN GTRTATLPRT GINKSGEQSC TETSKKGQVA AVSKTVRSKD TGISEESNGI SSTMGIMKMM
401: GLRNSTKHDD RYKNLKVSSL MLFPYEEFLK FFQCEVFDLS PRGLVNCGNS CYANAVLQSL TCTKPLVAYL LRRSHSRSCS GKDWCLMCEL EQHVMMLRES
501: GGPLSASRIL SHMRSINCQI GDGSQEDAHE FLRLLVASMQ SICLERLGGE TKVDPRLQET TLVQHMFGGR LRSKVKCLRC DHESERYENI MDLTLEIYGW
601: VESLQDALTQ FTRPEDLDGE NMYRCSRCAG YVRARKELSI HEAPNILTIV LKRFQEGRYG KINKCISFPE MLDMIPFMTR TGDVPPLYML YAVIVHLDTL
701: NASFSGHYIS YVKDLRGNWY RIDDSEIHPV PMTQVMSEGA YMLFYMRSYP RPQRGEHNGK APVHHSQPRN EMKEQRKPVN RFKPRADHKN TESSSSEWSL
801: FTSSDEASFT TESTRDSFST IDYTDVCHVV DSSSPFAIFN NVYHNVEPSP HNTVACRMFS GTKPETRYFV EQETNHNNTV VLDATPSLYP IPAPYPPHDY
901: YDQSMYVNYE TNPEFNNGQD QDRTYSYW

Arabidopsis Description

UBP15Ubiquitin-specific protease 15 [Source:UniProtKB/TrEMBL;Acc:F4I642]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.