Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07024 | Sorghum | mitochondrion | 94.24 | 93.79 |
| GSMUA_Achr10P... | Banana | cytosol | 65.95 | 79.71 |
| HORVU6Hr1G050090.1 | Barley | nucleus, plastid | 77.7 | 79.41 |
| TraesCS6A01G203500.1 | Wheat | nucleus, plastid | 76.74 | 78.43 |
| TraesCS6D01G187000.1 | Wheat | nucleus, plastid | 76.5 | 78.19 |
| Zm00001d003476_P002 | Maize | cytosol | 68.11 | 77.17 |
| Zm00001d025570_P003 | Maize | nucleus | 67.87 | 76.9 |
| GSMUA_Achr8P14390_001 | Banana | cytosol | 66.91 | 76.23 |
| VIT_07s0141g00230.t01 | Wine grape | nucleus | 67.39 | 76.15 |
| PGSC0003DMT400032703 | Potato | nucleus | 66.67 | 75.96 |
| KRH31299 | Soybean | nucleus | 66.91 | 75.61 |
| KRG97572 | Soybean | nucleus | 66.91 | 75.61 |
| KRH43175 | Soybean | nucleus | 66.67 | 75.34 |
| KRH59329 | Soybean | nucleus | 66.43 | 75.07 |
| Solyc04g056290.2.1 | Tomato | nucleus | 65.95 | 74.53 |
| TraesCS6B01G223900.1 | Wheat | plastid | 74.82 | 74.46 |
| Os02t0573400-01 | Rice | nucleus | 72.9 | 73.25 |
| GSMUA_Achr7P19160_001 | Banana | mitochondrion | 53.0 | 72.46 |
| Zm00001d028005_P001 | Maize | nucleus | 63.31 | 72.13 |
| GSMUA_Achr10P... | Banana | nucleus | 63.79 | 71.12 |
| VIT_09s0070g00500.t01 | Wine grape | golgi, mitochondrion, nucleus, peroxisome | 59.47 | 69.27 |
| Zm00001d000312_P002 | Maize | plastid | 16.79 | 24.91 |
| Zm00001d002086_P001 | Maize | plastid | 24.22 | 17.94 |
| Zm00001d022414_P001 | Maize | cytosol | 22.3 | 16.85 |
| Zm00001d051513_P001 | Maize | nucleus | 22.54 | 15.91 |
| Zm00001d010710_P002 | Maize | plastid | 23.74 | 14.49 |
| Zm00001d050489_P001 | Maize | nucleus | 15.11 | 13.79 |
| Zm00001d047023_P001 | Maize | nucleus | 20.38 | 13.69 |
| Zm00001d017686_P002 | Maize | mitochondrion, nucleus | 23.5 | 13.24 |
| Zm00001d045104_P005 | Maize | nucleus | 24.22 | 11.18 |
| Zm00001d020769_P005 | Maize | nucleus | 22.78 | 11.1 |
| Zm00001d036707_P006 | Maize | plasma membrane | 23.5 | 10.23 |
| Zm00001d053450_P066 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 22.78 | 9.79 |
| Zm00001d016165_P039 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 23.02 | 9.54 |
| Zm00001d007096_P007 | Maize | mitochondrion | 22.3 | 7.86 |
| Zm00001d000313_P001 | Maize | nucleus | 5.52 | 6.22 |
Protein Annotations
| EntrezGene:100194291 | MapMan:19.2.3.1.1.2 | Gene3D:3.90.70.10 | ProteinID:AQK71956.1 | UniProt:B4FI55 | EMBL:BT036793 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0036459 |
| InterPro:IPR028889 | PFAM:PF00443 | ScanProsite:PS00972 | ScanProsite:PS00973 | PFscan:PS50235 | PANTHER:PTHR43942 |
| PANTHER:PTHR43942:SF3 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SUPFAM:SSF54001 | UniParc:UPI00017B6FD1 | InterPro:USP_CS |
| InterPro:USP_dom | EnsemblPlantsGene:Zm00001d016918 | EnsemblPlants:Zm00001d016918_P001 | EnsemblPlants:Zm00001d016918_T001 | SEG:seg | : |
Description
Ubiquitin carboxyl-terminal hydrolase
Coordinates
chr5:-:179887272..179893070
Molecular Weight (calculated)
47025.3 Da
IEP (calculated)
6.376
GRAVY (calculated)
-0.423
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKLARSPTT SPPAAAADKH RSAAGSGLRS LASAASGWWD RWTVIGSGLS KLERAFGDQF PEGERYFGLE NFGNTCYCNS VLQALYYCAP FREQLLEYYR
101: RNRNLEDAEE NLLTCLADLF SQISASKKKT GVIAPKRFIQ MVRKLNEYFR GYMHQDAHEF LNFLLNEIVD ILEKESSSAK DSPGTTSSEN VSNGAAVDGV
201: RKEPLVTWVH KNFQGILTNE TRCLMCETIT AKDETFFDLS VDIEQNSSLT SCLKNFFSTE TLNADDKFFC DKCCSLQEAE KRMKIKKAPQ ILVIHLKRFK
301: FIEQLNRHKK LSYRVVYPLE LKLSSNSADA DCEYSLFAVV VHLGSGPNQG HYVAMIKSHD HWLSFDDDNV EMIPESTLQT FYGSYHEYSG NTDHGYILFY
401: GRIGGSGNEK TDSSDGV
101: RNRNLEDAEE NLLTCLADLF SQISASKKKT GVIAPKRFIQ MVRKLNEYFR GYMHQDAHEF LNFLLNEIVD ILEKESSSAK DSPGTTSSEN VSNGAAVDGV
201: RKEPLVTWVH KNFQGILTNE TRCLMCETIT AKDETFFDLS VDIEQNSSLT SCLKNFFSTE TLNADDKFFC DKCCSLQEAE KRMKIKKAPQ ILVIHLKRFK
301: FIEQLNRHKK LSYRVVYPLE LKLSSNSADA DCEYSLFAVV VHLGSGPNQG HYVAMIKSHD HWLSFDDDNV EMIPESTLQT FYGSYHEYSG NTDHGYILFY
401: GRIGGSGNEK TDSSDGV
001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCAPFREQ LLEHYANNKA DAEENLLTCL ADLFSQISSQ KKKTGVIAPK RFVQRLKKQN
101: ELFRSYMHQD AHEFLNYLLN ELVEILEKET QATKADNETS SSPEKIANVL KAPLANGVHK EPIVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD
201: IEQNSSITSC LKNFSSTETL HAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTVDEYVD IEYSLFAVVV
301: HVGSGPNHGH YVSLVKSHNH WLFFDDESVE IIEESAVQTF FGSSQEYSSN TDHGYILLYE SLGTR
101: ELFRSYMHQD AHEFLNYLLN ELVEILEKET QATKADNETS SSPEKIANVL KAPLANGVHK EPIVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD
201: IEQNSSITSC LKNFSSTETL HAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTVDEYVD IEYSLFAVVV
301: HVGSGPNHGH YVSLVKSHNH WLFFDDESVE IIEESAVQTF FGSSQEYSSN TDHGYILLYE SLGTR
Arabidopsis Description
UBP4UBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178W1M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.