Factsheet for HORVU6Hr1G050090.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G203500.1	Wheat	nucleus, plastid	95.1	95.1
TraesCS6D01G187000.1	Wheat	nucleus, plastid	94.85	94.85
TraesCS6B01G223900.1	Wheat	plastid	92.89	90.45
Zm00001d016918_P001	Maize	plastid	79.41	77.7
GSMUA_Achr10P...	Banana	cytosol	65.44	77.39
EES07024	Sorghum	mitochondrion	78.68	76.61
VIT_07s0141g00230.t01	Wine grape	nucleus	66.91	73.98
GSMUA_Achr8P14390_001	Banana	cytosol	66.18	73.77
KRH31299	Soybean	nucleus	66.42	73.44
KRG97572	Soybean	nucleus	66.42	73.44
Os02t0573400-01	Rice	nucleus	74.26	73.01
KRH43175	Soybean	nucleus	65.93	72.9
PGSC0003DMT400032703	Potato	nucleus	65.2	72.68
KRH59329	Soybean	nucleus	65.69	72.63
Solyc04g056290.2.1	Tomato	nucleus	65.44	72.36
HORVU2Hr1G079230.7	Barley	mitochondrion	72.55	71.5
HORVU4Hr1G078590.1	Barley	cytosol	62.99	70.22
GSMUA_Achr7P19160_001	Banana	mitochondrion	52.45	70.16
GSMUA_Achr10P...	Banana	nucleus	64.22	70.05
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	59.31	67.6
HORVU2Hr1G114330.1	Barley	cytosol	23.04	16.79
HORVU1Hr1G077630.2	Barley	plastid	23.28	14.64
HORVU6Hr1G067180.4	Barley	nucleus	23.04	12.72
HORVU2Hr1G022340.2	Barley	cytosol	22.79	12.25
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	21.81	12.08
HORVU7Hr1G030300.1	Barley	nucleus	22.79	10.0
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	23.77	9.77
HORVU7Hr1G111430.5	Barley	cytosol, nucleus	24.02	9.32

Protein Annotations

MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	EMBL:AK363961	UniProt:F2DJ93	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	EnsemblPlantsGene:HORVU6Hr1G050090	EnsemblPlants:HORVU6Hr1G050090.1
InterPro:IPR028889	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR43942
PANTHER:PTHR43942:SF3	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI00020064ED	InterPro:USP_CS
InterPro:USP_dom	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DJ93]

Coordinates

chrchr6H:+:303846578..303859594

Molecular Weight (calculated)

46171.5 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.364

Length

408 amino acids

Sequence
(BLAST)

001: MAKPARSPTA ETLPAVEKSR SAVGSGLRTL ASAASGFLDR WSVVGTGVSR LEKTLGDQFP EGEHYFGLEN FGNTCYCNSV LQALYYCIPF REQLLEYYAN
101: YRNPGDAEEN LLTCLADLFA QISLSKKKTG VISPKRFVHR VRKQNESFRG SMHQDAHEFL NFLLNEIVDI LEKEFSTVND SPETTSPGRV PNGEVYHLAN
201: EFRREPLVTW VHKNFQGILT NETKCLMCET VTAKDETFLD LSIDIEQNSS LTSCLKSFFS TEILNAEDKF FCDNCCSLQE AQKRMKIKKA PQILVIHLKR
301: FKFIEQLSQH KKLSYRVVYP MELKLSSASD DVDCAYSLFA VVVHLGSGAN QGHYVSQIKS GDHWLSFDDD SVDRIQESTL QTFYGSSREY SGNTDHGYIL
401: FYESISKS

Best Arabidopsis Sequence Match ( AT2G22310.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCAPFREQ LLEHYANNKA DAEENLLTCL ADLFSQISSQ KKKTGVIAPK RFVQRLKKQN
101: ELFRSYMHQD AHEFLNYLLN ELVEILEKET QATKADNETS SSPEKIANVL KAPLANGVHK EPIVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD
201: IEQNSSITSC LKNFSSTETL HAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTVDEYVD IEYSLFAVVV
301: HVGSGPNHGH YVSLVKSHNH WLFFDDESVE IIEESAVQTF FGSSQEYSSN TDHGYILLYE SLGTR

Arabidopsis Description

UBP4UBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178W1M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.