Factsheet for TraesCS6A01G203500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G187000.1	Wheat	nucleus, plastid	99.75	99.75
HORVU6Hr1G050090.1	Barley	nucleus, plastid	95.1	95.1
TraesCS6B01G223900.1	Wheat	plastid	95.1	92.6
GSMUA_Achr10P...	Banana	cytosol	65.93	77.97
TraesCS2A01G340100.1	Wheat	cytosol	69.61	76.76
Zm00001d016918_P001	Maize	plastid	78.43	76.74
EES07024	Sorghum	mitochondrion	78.19	76.13
VIT_07s0141g00230.t01	Wine grape	nucleus	68.14	75.34
GSMUA_Achr8P14390_001	Banana	cytosol	66.42	74.04
KRG97572	Soybean	nucleus	66.91	73.98
KRH31299	Soybean	nucleus	66.91	73.98
Os02t0573400-01	Rice	nucleus	75.25	73.98
PGSC0003DMT400032703	Potato	nucleus	65.93	73.5
KRH59329	Soybean	nucleus	66.42	73.44
KRH43175	Soybean	nucleus	66.42	73.44
Solyc04g056290.2.1	Tomato	nucleus	66.18	73.17
GSMUA_Achr7P19160_001	Banana	mitochondrion	53.19	71.15
TraesCS4A01G406600.1	Wheat	cytosol	63.73	71.04
GSMUA_Achr10P...	Banana	nucleus	64.71	70.59
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	61.03	69.55
TraesCS2A01G516100.1	Wheat	mitochondrion	22.06	24.32
TraesCS1A01G329200.2	Wheat	plastid	22.55	14.18
TraesCS6A01G264800.1	Wheat	nucleus	22.55	12.53
TraesCS2A01G127200.3	Wheat	cytosol	22.06	12.03
TraesCS1A01G192900.1	Wheat	cytosol	16.91	10.3
TraesCS7A01G282200.4	Wheat	plastid	24.51	10.11
TraesCS6A01G192600.1	Wheat	plasma membrane	24.02	10.0
TraesCS7A01G147900.1	Wheat	nucleus	22.55	9.99
TraesCS5A01G246000.3	Wheat	vacuole	23.04	9.77
TraesCS7A01G498400.1	Wheat	extracellular, golgi, plasma membrane	22.79	8.77
TraesCS6A01G357500.1	Wheat	mitochondrion, nucleus	22.79	8.68

Protein Annotations

MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973
PFscan:PS50235	PANTHER:PTHR43942	PANTHER:PTHR43942:SF3	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001
EnsemblPlantsGene:TraesCS6A01G203500	EnsemblPlants:TraesCS6A01G203500.1	InterPro:USP_CS	InterPro:USP_dom	TIGR:cd02663	SEG:seg

Description

No Description!

Coordinates

chr6A:-:346590044..346598861

Molecular Weight (calculated)

46031.3 Da

IEP (calculated)

6.194

GRAVY (calculated)

-0.346

Length

408 amino acids

Sequence
(BLAST)

001: MAKPARSPTA EALPAAEKSR SAVGSGLRSL ASAASGFLDR WSVVGTGVSR LEKTLGDQFP EGEHYFGLEN FGNTCYCNSV LQALYYCIPF REQLLEYYAN
101: YRNPGDAEEN LLTCLADLFA QISLSKKKTG VISPKRFVHR VRKQNELFRS NMHQDAHEFL NFLLNEIVDI LEKEFSTVKD SPESTSPGGV ANGEVYHLAN
201: EVRREPLVTW VHKNFQGILT NETKCLMCET VTAKDETFLD LSIDIEQNSS LTSCLKSFFS TEILNAEDKF FCDNCCSLQE AQKRMKIKKA PQILVIHLKR
301: FKFIEQLSQH KKLSYRVVYP MELKLSSASD DVDCEYSLFA VVVHVGNAAN HGHYVSQIKS GDHWLSFDDD SVDKIQESTL QTFYGSSREY SGNSDHGYIL
401: FYESVAKS

Best Arabidopsis Sequence Match ( AT2G22310.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCAPFREQ LLEHYANNKA DAEENLLTCL ADLFSQISSQ KKKTGVIAPK RFVQRLKKQN
101: ELFRSYMHQD AHEFLNYLLN ELVEILEKET QATKADNETS SSPEKIANVL KAPLANGVHK EPIVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD
201: IEQNSSITSC LKNFSSTETL HAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTVDEYVD IEYSLFAVVV
301: HVGSGPNHGH YVSLVKSHNH WLFFDDESVE IIEESAVQTF FGSSQEYSSN TDHGYILLYE SLGTR

Arabidopsis Description

UBP4UBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178W1M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.