Factsheet for TraesCS6B01G223900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G203500.1	Wheat	nucleus, plastid	92.6	95.1
TraesCS6D01G187000.1	Wheat	nucleus, plastid	92.36	94.85
HORVU6Hr1G050090.1	Barley	nucleus, plastid	90.45	92.89
GSMUA_Achr10P...	Banana	cytosol	62.77	76.23
Zm00001d016918_P001	Maize	plastid	74.46	74.82
EES07024	Sorghum	mitochondrion	74.46	74.46
VIT_07s0141g00230.t01	Wine grape	nucleus	65.39	74.25
GSMUA_Achr8P14390_001	Banana	cytosol	63.25	72.4
KRG97572	Soybean	nucleus	63.72	72.36
KRH31299	Soybean	nucleus	63.72	72.36
KRH43175	Soybean	nucleus	63.48	72.09
KRH59329	Soybean	nucleus	63.48	72.09
Solyc04g056290.2.1	Tomato	nucleus	63.48	72.09
PGSC0003DMT400032703	Potato	nucleus	62.77	71.86
Os02t0573400-01	Rice	nucleus	70.64	71.33
GSMUA_Achr10P...	Banana	nucleus	62.05	69.52
GSMUA_Achr7P19160_001	Banana	mitochondrion	50.6	69.51
TraesCS4B01G306100.1	Wheat	cytosol	60.14	68.85
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	57.76	67.6
TraesCS2B01G544700.1	Wheat	mitochondrion	21.24	24.05
TraesCS2B01G408400.1	Wheat	cytosol	19.57	19.03
TraesCS1B01G342600.2	Wheat	plastid	21.96	14.24
TraesCS3B01G442400.1	Wheat	cytosol	20.53	13.83
TraesCS6B01G291800.1	Wheat	nucleus	21.72	12.31
TraesCS2B01G149000.2	Wheat	cytosol	21.96	11.93
TraesCS1B01G207800.1	Wheat	cytosol, nucleus, plastid	21.48	10.47
TraesCS7B01G179000.2	Wheat	plastid	23.63	9.97
TraesCS5B01G243400.1	Wheat	vacuole	21.72	9.93
TraesCS7B01G051400.2	Wheat	nucleus	21.96	9.8
TraesCS6B01G231700.4	Wheat	plasma membrane	22.2	9.45
TraesCS6B01G389500.1	Wheat	nucleus	22.2	8.7
TraesCS7B01G405400.1	Wheat	golgi, plasma membrane	21.72	8.47

Protein Annotations

MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	PFAM:PF00443	ScanProsite:PS00972	PFscan:PS50235
PANTHER:PTHR43942	PANTHER:PTHR43942:SF3	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	EnsemblPlantsGene:TraesCS6B01G223900
EnsemblPlants:TraesCS6B01G223900.1	InterPro:USP_CS	InterPro:USP_dom	TIGR:cd02663	SEG:seg	:

Description

No Description!

Coordinates

chr6B:+:337836434..337863976

Molecular Weight (calculated)

47431.0 Da

IEP (calculated)

6.026

GRAVY (calculated)

-0.379

Length

419 amino acids

Sequence
(BLAST)

001: MAKPARSPTA EALPAAVGSG LRSLASAASG FLDRWSVVGT GVSRLEKTLG DQFPEGEHYF GLENFGNTCY CNSVLQALYY CIPFREQLLE YYTNYRNPGD
101: AEENLLTCLA DLFAQISLSK KKTGVISPKR FVHRVRKQNE SFCSSMHQDA HEFLNFLLNE IVDILEKEFS TVKDSPESTS PGRAANGEVY HLANEVRREP
201: LVTWVHKNFQ GILTNETKCL MCETVTAKDE TFLDLSIDIE QNSSLTSCLK SFFSTEILNA EDKFFCDNCC SLQEAQKRMK IKKAPQILVI HLKRFKFIEQ
301: LSQHKKLSYR VVYPMELKLS SASHDVDCEY SLFAVVVHTG CREGPEEECP HPKEGGWCCV YGGHYVSQIK SGDHWLSFDD DSVDKIQEST LQTFYGSSRE
401: YSRNSDHGYI LFYESVAKS

Best Arabidopsis Sequence Match ( AT2G22310.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCAPFREQ LLEHYANNKA DAEENLLTCL ADLFSQISSQ KKKTGVIAPK RFVQRLKKQN
101: ELFRSYMHQD AHEFLNYLLN ELVEILEKET QATKADNETS SSPEKIANVL KAPLANGVHK EPIVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD
201: IEQNSSITSC LKNFSSTETL HAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTVDEYVD IEYSLFAVVV
301: HVGSGPNHGH YVSLVKSHNH WLFFDDESVE IIEESAVQTF FGSSQEYSSN TDHGYILLYE SLGTR

Arabidopsis Description

UBP4UBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178W1M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.