Factsheet for VIT_07s0141g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	86.99	93.04
KRH59329	Soybean	nucleus	92.68	92.68
KRH43175	Soybean	nucleus	92.41	92.41
KRG97572	Soybean	nucleus	91.6	91.6
KRH31299	Soybean	nucleus	91.33	91.33
AT4G39910.1	Thale cress	nucleus	90.79	90.3
AT2G22310.1	Thale cress	nucleus	88.89	89.86
CDY68864	Canola	nucleus	90.24	89.52
Bra010647.1-P	Field mustard	nucleus	90.24	89.52
CDY13770	Canola	nucleus	86.18	89.33
CDX76934	Canola	nucleus	85.64	89.27
CDX69375	Canola	nucleus	89.7	89.22
Bra038533.1-P	Field mustard	nucleus	85.64	89.01
GSMUA_Achr8P14390_001	Banana	cytosol	86.45	87.16
Zm00001d003476_P002	Maize	cytosol	86.72	86.96
EES12269	Sorghum	cytosol	86.72	86.96
Zm00001d025570_P003	Maize	nucleus	86.18	86.41
Os04t0452400-01	Rice	nucleus	85.91	86.38
GSMUA_Achr7P19160_001	Banana	mitochondrion	71.27	86.23
TraesCS2A01G340100.1	Wheat	cytosol	86.18	85.95
Zm00001d028005_P001	Maize	nucleus	84.28	84.97
Os03t0190800-01	Rice	cytosol	84.01	84.7
HORVU4Hr1G078590.1	Barley	cytosol	83.74	84.43
TraesCS4B01G306100.1	Wheat	cytosol	83.74	84.43
EER92723	Sorghum	nucleus	83.74	84.43
TraesCS4A01G406600.1	Wheat	cytosol	83.47	84.15
TraesCS4D01G304300.1	Wheat	cytosol	83.47	84.15
TraesCS7D01G125700.1	Wheat	nucleus	83.2	83.88
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	81.03	83.52
CDY63898	Canola	nucleus	89.16	82.66
HORVU2Hr1G079230.7	Barley	mitochondrion	86.45	77.05
Bra011823.1-P	Field mustard	nucleus	88.62	74.15
CDY68683	Canola	endoplasmic reticulum, vacuole	90.24	68.38
TraesCS6A01G203500.1	Wheat	nucleus, plastid	75.34	68.14
TraesCS6D01G187000.1	Wheat	nucleus, plastid	75.07	67.89
Zm00001d016918_P001	Maize	plastid	76.15	67.39
EES07024	Sorghum	mitochondrion	76.15	67.06
HORVU6Hr1G050090.1	Barley	nucleus, plastid	73.98	66.91
TraesCS6B01G223900.1	Wheat	plastid	74.25	65.39
Os02t0573400-01	Rice	nucleus	71.27	63.37
VIT_11s0118g00280.t01	Wine grape	mitochondrion	17.89	23.32
VIT_13s0019g01690.t01	Wine grape	cytosol	27.1	18.08
VIT_04s0008g06860.t01	Wine grape	nucleus	24.93	16.64
VIT_02s0012g01340.t01	Wine grape	nucleus	21.95	15.43
VIT_19s0093g00560.t01	Wine grape	mitochondrion	25.47	14.8
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	27.37	13.65
VIT_11s0118g00290.t01	Wine grape	nucleus	11.65	12.22
VIT_04s0069g00760.t01	Wine grape	nucleus	26.56	11.34
VIT_00s0199g00030.t01	Wine grape	vacuole	27.64	11.3
VIT_19s0014g00210.t01	Wine grape	nucleus	27.1	11.19
VIT_19s0140g00200.t01	Wine grape	plasma membrane	27.37	10.13
VIT_00s0174g00260.t01	Wine grape	nucleus	27.1	10.03
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	26.02	7.84

Protein Annotations

EntrezGene:100253110	wikigene:100253110	MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	EMBL:AM434540	MEROPS:C19.008
ProteinID:CAN67091	ProteinID:CAN67091.1	ProteinID:CCB59086	ProteinID:CCB59086.1	UniProt:F6HWM1	EMBL:FN596274
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
InterPro:IPR028889	EntrezGene:LOC100253110	wikigene:LOC100253110	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973
PFscan:PS50235	PANTHER:PTHR43942	PANTHER:PTHR43942:SF2	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001
UniParc:UPI00015CD5B4	InterPro:USP_CS	InterPro:USP_dom	ArrayExpress:VIT_07s0141g00230	EnsemblPlantsGene:VIT_07s0141g00230	EnsemblPlants:VIT_07s0141g00230.t01
unigene:Vvi.19077	RefSeq:XP_002270407	RefSeq:XP_002270407.1	RefSeq:XP_010645221.1	:	:

Description

No Description!

Coordinates

chr7_random:+:141805..154203

Molecular Weight (calculated)

42113.7 Da

IEP (calculated)

5.977

GRAVY (calculated)

-0.463

Length

369 amino acids

Sequence
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGLENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTNNKN LADAEENLLT CLADLFMQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNFL LNELVDILEK EASASKSDPE TSSPPEKTAN GPKTAQANGV QKEPLVTWVH KNFQGILTNE TRCLRCETVT ARDETFLDLS
201: LDIEQNSSIT SCLKNFSSTE TLNAEDKFFC DKCCSLQEAQ KRMKIKKPPH ILVIHLKRFK YIEQLGRYKK LSYRVVFPLE LKLSNTVEDA DSEYSLFAVV
301: VHVGSGPNHG HYVSLVKSHN HWLFFDDENV EMIDESSVQT FFGSAQEYSS NTDHGYILFY ESLATNDKS

Best Arabidopsis Sequence Match ( AT4G39910.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTSNKS VADAEENLMT CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHE TSSSSSPEKI ANGLKVPQAN GVVHKEPIVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYIEQLGR YKKLSYRVVF PLELKLSNTV EPYADVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K

Arabidopsis Description

UBP3Ubiquitin carboxyl-terminal hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:O24454]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.