Factsheet for VIT_19s0140g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13569	Soybean	endoplasmic reticulum, plasma membrane	57.87	58.34
KRH21804	Soybean	endoplasmic reticulum, plasma membrane	56.87	57.27
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	54.36	56.11
CDY65125	Canola	endoplasmic reticulum, plasma membrane, vacuole	47.64	54.16
CDY48465	Canola	endoplasmic reticulum, plasma membrane, vacuole	47.34	53.88
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	47.24	53.71
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	47.64	53.25
GSMUA_Achr3P03560_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	44.23	52.63
CDX96790	Canola	nucleus	43.53	51.98
CDX83925	Canola	nucleus	44.03	51.83
AT1G17110.2	Thale cress	endoplasmic reticulum, plasma membrane	47.74	51.29
GSMUA_Achr3P17560_001	Banana	endoplasmic reticulum, golgi	44.93	48.38
GSMUA_Achr2P20080_001	Banana	plasma membrane	43.53	46.12
OQU84698	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	44.33	45.76
TraesCS6D01G179700.1	Wheat	plasma membrane	44.83	45.75
Os02t0244300-01	Rice	endoplasmic reticulum, plasma membrane	44.73	45.74
TraesCS6B01G231700.4	Wheat	plasma membrane	44.73	45.33
TraesCS6A01G192600.1	Wheat	plasma membrane	44.53	45.31
Zm00001d053450_P066	Maize	endoplasmic reticulum, plasma membrane, vacuole	43.43	44.64
Zm00001d016165_P039	Maize	endoplasmic reticulum, plasma membrane, vacuole	44.13	43.74
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	25.18	33.92
VIT_00s0199g00030.t01	Wine grape	vacuole	27.38	30.23
VIT_07s0141g00230.t01	Wine grape	nucleus	10.13	27.37
VIT_04s0069g00760.t01	Wine grape	nucleus	23.27	26.85
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	30.49	24.82
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	8.83	24.58
VIT_11s0118g00280.t01	Wine grape	mitochondrion	6.32	22.26
VIT_19s0093g00560.t01	Wine grape	mitochondrion	13.94	21.89
VIT_04s0008g06860.t01	Wine grape	nucleus	11.74	21.16
VIT_13s0019g01690.t01	Wine grape	cytosol	11.74	21.16
VIT_02s0012g01340.t01	Wine grape	nucleus	10.53	20.0
VIT_11s0118g00290.t01	Wine grape	nucleus	6.22	17.61
VIT_19s0014g00210.t01	Wine grape	nucleus	15.65	17.45
VIT_00s0174g00260.t01	Wine grape	nucleus	16.05	16.05

Protein Annotations

EntrezGene:100260067	MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	ProteinID:CCB57268	ProteinID:CCB57268.1
UniProt:F6HRG0	EMBL:FN596014	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	GO:GO:0046872	InterPro:IPR002893	InterPro:IPR028889	PFAM:PF00443
PFAM:PF01753	ScanProsite:PS00972	PFscan:PS50235	PFscan:PS50865	PANTHER:PTHR45492	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	TIGR:TC56179	TIGR:TC56603	TMHMM:TMhelix
UniParc:UPI0001986328	InterPro:USP_CS	InterPro:USP_dom	ArrayExpress:VIT_19s0140g00200	EnsemblPlantsGene:VIT_19s0140g00200	EnsemblPlants:VIT_19s0140g00200.t01
unigene:Vvi.7751	RefSeq:XP_010644793.1	RefSeq:XP_019072778.1	RefSeq:XP_019072779.1	InterPro:Znf_MYND	SEG:seg

Description

No Description!

Coordinates

chr19:+:15754749..15779015

Molecular Weight (calculated)

111393.0 Da

IEP (calculated)

7.948

GRAVY (calculated)

-0.479

Length

997 amino acids

Sequence
(BLAST)

001: MLEPREADIP ALFLFLIVFP LVTYILLGKW SEVTKKKKRV SLLAQLAAEE AFKAEAMATA SVMPLVSSSK SGNHECARCF GPATTRCSRC KSVRYCSGKC
101: QIIHWRQVHK EECQQLETHS SITSLKDAAI EESVHERVSV NDSMNSQFYG SGIKQTVLEK ASGNIINPSF STGMPATNAC SSIDTSRITM MERRTGDKWV
201: SRKSSREILK KEDVAICGST EEVSTSSNTS ITSSDDISLK EAYTRQKLGN CDSVVSEEEM YKKYNFSAPT AFARGHTSSS MHERHKLQNQ NGNVFEPRSN
301: YGISSSCSEK NGTNGCEIER DHISCGGNLH REGITANDET GEPNCSPGIT SIKRSGKSKT ALHTLGTKTT KSPKASMKLS REETCSEIER KGQTAEATRM
401: SDSTPILAPG NNEVTSMGFM KMMGLRKPLK PPKQDASEES SDIHKKIKML FPYEEFVRFF QCEVFNISPR GLLNCGNSCY ANAVLQCLTC TKPLIIYLLQ
501: RSHSRTCCVT NWCLMCELEK HVMMLRESGG PLSPSRILSH MRSINCQIGD GSQEDAHEFL RLLVTSMQSI CLEKLGGERE VDARLQETTF IQHTFGGRLR
601: SKVKCLRCHL ESERYENIMD LTLEIFGWVE SLEDALTQFT TPEDLDGENM YRCRRCTTYV RARKQLSIHE APNILTIVLK RFQEGRYGKI NKCITFPDML
701: DMIPFMTGTY DVPPLYMLYA VVVHMDTLNA SFSGHYVAYV KDLQGNWFRV DDAEVQPVST NQVMSEGAYI LFYMRSWPRP PRAFPVKAIQ QQAPASAKHC
801: SSKTHKSSRS KPRGDFVGLE PSNPKREVSP GFSSATSNGI LRNGRNGSRT YVEPISQEFS DAPSSDWSLF TSSDEASFTT ESTRDSFSTV DYAETCNVDP
901: ISSIFNTSYM PEYASGNAVS CRMLSNGKLE TRYVQEKKGY VLDSYLPTQP DKAWKGENLK QVSVSTEFPS DCNCGMSVKY GSNPKDTFVR TSGCCKL

Best Arabidopsis Sequence Match ( AT1G17110.3 )
(BLAST)

001: MLEPRGADIP ILFLVLVVLP VVAYILLGKW SNISEKRVRA NLLAQMAAEE ALRAETVVNA DRGVRFESVA TENRAQRTRT KTVSAGGGAV RAEFDAGARE
101: TVAEQRSDSV TATCGVTVVA PVNNNELHVC ARCFGPAKTR CSRCKSVRYC SGKCQIIHWR VAHKDECVPV ESCSSSSERV SFEKDSVLYD HGMDSTMYSN
201: NTTQAAKGKT SKSSVDFASL GISQNDITPQ INTQGRKSVG KQHSSKANRE SCRRDSATVF DSSDEAASAG GDNKTSHIKH KSRGNSYAAE TNPRRHSVDS
301: SAVQMNGQSF VSGMQESHKH ENNLGVRSSF GCPNTQYPSN GTRTATLPRT GINKSGEQSC TETSKKGQVA AVSKTVRSKD TGISEESNGI SSTMGIMKMM
401: GLRNSTKHDD RYKNLKMLFP YEEFLKFFQC EVFDLSPRGL VNCGNSCYAN AVLQSLTCTK PLVAYLLRRS HSRSCSGKDW CLMCELEQHV MMLRESGGPL
501: SASRILSHMR SINCQIGDGS QEDAHEFLRL LVASMQSICL ERLGGETKVD PRLQETTLVQ HMFGGRLRSK VKCLRCDHES ERYENIMDLT LEIYGWVESL
601: QDALTQFTRP EDLDGENMYR CSRCAGYVRA RKELSIHEAP NILTIVLKRF QEGRYGKINK CISFPEMLDM IPFMTRTGDV PPLYMLYAVI VHLDTLNASF
701: SGHYISYVKD LRGNWYRIDD SEIHPVPMTQ VMSEGAYMLF YMRSYPRPQR GEHNGKAPVH HSQPRNEMKE QRKPVNRFKP RADHKNTESS SSEWSLFTSS
801: DEASFTTEST RDSFSTIDYT DVCHVVDSSS PFAIFNNVYH NVEPSPHNTV ACRMFSGTKP ETRYFVEQET NHNNTVVLDA TPSLYPIPAP YPPHDYYDQS
901: MYVNYETNPE FNNGQDQDRT YSYW

Arabidopsis Description

UBP15Ubiquitin-specific protease 15 [Source:UniProtKB/TrEMBL;Acc:F4I642]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.