Factsheet for VIT_11s0118g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P17050_001	Banana	plastid	53.98	36.4
Zm00001d002086_P001	Maize	plastid	56.82	35.52
EES12962	Sorghum	plastid	56.53	35.22
VIT_04s0008g06860.t01	Wine grape	nucleus	48.01	30.56
TraesCS2A01G516100.1	Wheat	mitochondrion	24.43	23.24
TraesCS2B01G544700.1	Wheat	mitochondrion	24.43	23.24
TraesCS2D01G517600.1	Wheat	mitochondrion	24.43	23.24
Os04t0647300-01	Rice	nucleus	37.22	22.17
HORVU2Hr1G114330.1	Barley	cytosol	26.99	16.96
VIT_07s0141g00230.t01	Wine grape	nucleus	12.22	11.65
VIT_13s0019g01690.t01	Wine grape	cytosol	13.92	8.86
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	8.81	8.66
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	16.76	7.97
VIT_00s0199g00030.t01	Wine grape	vacuole	16.76	6.53
VIT_19s0093g00560.t01	Wine grape	mitochondrion	11.65	6.46
VIT_04s0069g00760.t01	Wine grape	nucleus	15.62	6.37
VIT_19s0140g00200.t01	Wine grape	plasma membrane	17.61	6.22
VIT_19s0014g00210.t01	Wine grape	nucleus	13.64	5.37
VIT_11s0118g00280.t01	Wine grape	mitochondrion	4.26	5.3
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	18.18	5.22
VIT_00s0174g00260.t01	Wine grape	nucleus	14.2	5.02
VIT_02s0012g01340.t01	Wine grape	nucleus	5.68	3.81

Protein Annotations

EntrezGene:100243788	wikigene:100243788	Gene3D:3.30.40.10	Gene3D:3.90.70.10	MapMan:35.1	MEROPS:C19.A11
ProteinID:CCB49914	ProteinID:CCB49914.1	UniProt:F6HCG8	EMBL:FN595515	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006464	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008234	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	GO:GO:0046872	InterPro:IPR001607	InterPro:IPR013083
InterPro:IPR028889	EntrezGene:LOC100243788	wikigene:LOC100243788	PFAM:PF00443	PFAM:PF02148	ScanProsite:PS00972
PFscan:PS50235	PFscan:PS50271	PANTHER:PTHR43961	PANTHER:PTHR43961:SF3	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF54001	SUPFAM:SSF57850	TIGR:TC64326	UniParc:UPI0002108A59	InterPro:USP_CS	InterPro:USP_dom
ArrayExpress:VIT_11s0118g00290	EnsemblPlantsGene:VIT_11s0118g00290	EnsemblPlants:VIT_11s0118g00290.t01	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_UBP	SEG:seg

Description

Ubiquitinyl hydrolase 1 [Source:UniProtKB/TrEMBL;Acc:F6HCG8]

Coordinates

chr11:-:5946783..5949768

Molecular Weight (calculated)

39287.4 Da

IEP (calculated)

9.254

GRAVY (calculated)

-0.618

Length

352 amino acids

Sequence
(BLAST)

001: MSSKINHHRI NGQIPQPCPH LAEYRTRNGS KPFRALQECL RVKPLGRAAI RRDPSEVPRC GACGEAARSR LYACVTCAAV SCHSSDSPSP SHAAAHAVSM
101: PPGHEIAVDV DRAELFCCAC RDQVYDRDFD AAVVVAQTTA STLGGGSIRS SPPPENLRKR RRVDYRPWTP DLRERVLMTR NSSPLQRTEG ADGANLSNLP
201: WGLRGLNNLG NTCFMNSVLQ ALLHTPPLRN YFLSDRHNRY YCQQKNNASN ASKRNAASND SNSNKNLRLC LACDMDAMFS AVFSGDRTPY SPAKFLYSWW
301: QHAANLASYE QQDAHEFFIS MLDGIHEKMG KDKRKTQSQG CGFRSFVCRP RH

Best Arabidopsis Sequence Match ( AT5G10790.1 )
(BLAST)

001: MSARISFLKN PDPCNHLSDY KLRYGTDGYK SFNNLFRCFN DARIKIKLQG IDIPRCSYCS VYQKRLYICL ICRSISCSSH ILLHTQLNKG HDIAIDVERS
101: ELYCCACIDQ VYDSEFDEVV VSKQLFGLGM SVKSGADVVA VRSNKKRRLD SQLIIGSNFL VSPRDRREKW TFPLGLRGLN NLGSTCFMNA VLQALVHAPP
201: LRNFWLSGQH NRDLCPRRTM GLLCLPCDLD VIFSAMFSGD RTPYSPAHLL YSWWQHSTNL ATYEQQDSHE FFISLLDRIH ENEGKSKCLY QDNEECQCIT
301: HKAFSGLLRS DVTCTTCGST STTYDPFIDI SLTLDSMNGF SPADCRKNRY SGGPSVNAIM PTLSGCLDFF TRSEKLGPDQ KLNCQSCGEK RESSKQMSIR
401: RLPLLLCLHV KRFEHSLTRK TSRKIDSYLQ YPFRLNMSPY LSSSIIGKRF GNRIFAFDGE GEYDSSSSSS PSAEFEIFAV VTHKGMLESG HYVTYLRLKG
501: LWYRCDDAWI NEVEEEVVRG CECYMLFYAQ ETVIQKAHKE LSYQVISMAD AFPFADC

Arabidopsis Description

UBP22Ubiquitinyl hydrolase 1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPE9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.