Factsheet for VIT_00s0199g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	73.53	89.73
AT5G65450.2	Thale cress	endoplasmic reticulum, golgi, mitochondrion, nucleus	40.31	48.53
KRH74502	Soybean	golgi, plasma membrane, vacuole	49.61	48.33
KRH69660	Soybean	golgi	49.83	47.97
CDY08792	Canola	vacuole	38.54	46.46
Bra024386.1-P	Field mustard	golgi	38.43	45.24
CDY14564	Canola	golgi	37.87	44.88
GSMUA_Achr10P...	Banana	nucleus	18.94	42.12
Zm00001d050489_P001	Maize	nucleus	20.71	40.92
GSMUA_Achr5P22990_001	Banana	vacuole	39.87	40.04
GSMUA_Achr10P...	Banana	golgi	19.71	39.56
GSMUA_Achr7P19010_001	Banana	nucleus	19.49	38.26
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	16.28	38.08
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	51.16	37.71
OQU80649	Sorghum	nucleus	31.67	35.48
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	28.57	35.01
Os08t0478500-01	Rice	plastid	37.21	34.36
GSMUA_AchrUn_...	Banana	golgi, vacuole	38.32	34.16
Solyc04g076210.2.1	Tomato	nucleus	41.42	34.03
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	34.55	33.62
TraesCS7A01G282200.4	Wheat	plastid	35.99	32.86
TraesCS7B01G179000.2	Wheat	plastid	36.1	32.83
TraesCS7D01G280800.4	Wheat	plastid	35.66	32.46
Zm00001d020769_P005	Maize	nucleus	30.56	32.24
OQU89635	Sorghum	vacuole	31.56	31.25
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	30.79	30.72
TraesCS5B01G243400.1	Wheat	vacuole	31.01	30.57
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	32.89	29.91
TraesCS5A01G246000.3	Wheat	vacuole	31.23	29.31
VIT_07s0141g00230.t01	Wine grape	nucleus	11.3	27.64
VIT_04s0069g00760.t01	Wine grape	nucleus	26.25	27.43
VIT_19s0140g00200.t01	Wine grape	plasma membrane	30.23	27.38
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	9.86	24.86
VIT_13s0019g01690.t01	Wine grape	cytosol	12.62	20.61
VIT_11s0118g00280.t01	Wine grape	mitochondrion	6.42	20.49
VIT_19s0093g00560.t01	Wine grape	mitochondrion	14.29	20.32
VIT_02s0012g01340.t01	Wine grape	nucleus	11.3	19.43
VIT_04s0008g06860.t01	Wine grape	nucleus	11.85	19.35
VIT_19s0014g00210.t01	Wine grape	nucleus	17.39	17.56
VIT_11s0118g00290.t01	Wine grape	nucleus	6.53	16.76
VIT_00s0174g00260.t01	Wine grape	nucleus	17.83	16.15

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	ProteinID:CCB45236	ProteinID:CCB45236.1	UniProt:F6GZ50
EMBL:FN594987	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	GO:GO:0046872	InterPro:IPR002893	InterPro:IPR028889	PFAM:PF00443
PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865	PANTHER:PTHR45492
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	UniParc:UPI00021080F4	InterPro:USP_CS
InterPro:USP_dom	ArrayExpress:VIT_00s0199g00030	EnsemblPlantsGene:VIT_00s0199g00030	EnsemblPlants:VIT_00s0199g00030.t01	InterPro:Znf_MYND	SEG:seg

Description

No Description!

Coordinates

chrUn:-:11080605..11087816

Molecular Weight (calculated)

99277.2 Da

IEP (calculated)

8.063

GRAVY (calculated)

-0.424

Length

903 amino acids

Sequence
(BLAST)

001: MGNLGFYSLF SLVVFVVGVI LRQKWRNAAE RKEEIMRLVA MASEEAAAVE LEAAVEYSSI PVARRYQCAA CYGPATTRCS QCKAVRYCSG KCQIKHWRQG
101: HKNECVPPTP TSAMQFNDGS GFGGKTTSQN HDVLGSSTPD SSKGLSDDIS CDSFVTISNV NNIISTACAS KLNQMKSICD DEVDHFQSQF PKAKTAICDD
201: TRPKSLSNKK SSGGARHSDA SKHRSSPLLS RSGSDFLASD SRNEPQVVKR KEVSSVSSTV SDHSSPAPEG HSASVAKSAK HTSPNMHSEV AGLQQNAYNG
301: LRTSVRKVAQ HFRASKQSKP QLLGIGSGIA GKYNHKMLFP YELFMELYSW EKVELSPFGL MNCGNSCYAN AVLQCLTFTR PLASYLLQGL HSKACPKEDW
401: CFICEFECLI LEAREGKSPL SPMGILSQIQ RIGSHLGHGR EEDAHEFLRY AVDTMQSVCL KDTGVVGPLA EDTTLVGLTF GGYLLSKIKC MKCQGKSERC
501: ERMMDLTVEI DGDIGTLEEA LAQFTATEIL DGENKYQCGR CRSYEKAKKK LMVLEAPNIL TIVLKRFQSS NFGKLNKSVR FPETLNLTPY MSGTDDRYPV
601: YSLYAVVVHL DIMNAAFSGH YVCFVKNFLG DWFRIDDSTV TPVELDRVLL EGAYMLLYAR RSPKPPALSR NMAVSHEGKL KMRNLEAVPS SLAATKPRSN
701: SAVPGVDRSM IQRKLENSCW TTWDGPTSNQ WLRPEDWRSH SMQRVGVVDS SSESSSLFSC CSDEGSCSTE STNDSASTGD FSDYIFGEVG NSWYRNYGLS
801: SDSDITPSLF SRPSGSSRSN GGDGVRRRLP HQGSSWGEEL EGEGNSSFLY NGTSKHSKMC TTQFGGSSSE TDLGRLVAGK PIDVKSGVPF KRASRERSAQ
901: TFY

Best Arabidopsis Sequence Match ( AT5G65450.2 )
(BLAST)

001: MPVSLESETL GFRCLLIGCM MLVFLLIRRQ WRSASVRREE VIRLIALATE ESYLAEEVRP ATVDYGGDSV SDVYRCAVCL YPTTTRCSQC KSVRYCSSKC
101: QILHWRRGHK EECRSPDYDE EKEEYVQSDY DAKESNVDFP SRGTAYESSS NVSVDVACDM STSRPSIHKV QPRSEAVDFT TSLNIKDNLY ETRPLSRKKS
201: RNRTDKVESA SNYSKGKTDA KLRKLGNQNS RRSGDSANMS ISDQFLSVGF EEEMNALKHE RITSEPSSAS AAMSSSSTLL LPSKANSKPK VSQASSSGLK
301: TSVQKVVQHF RPPQSSKKSQ PSSSIDEMSF SYELFVKLYC DRVELQPFGL VNLGNSCYAN AVLQCLAFTR PLISYLIRGL HSKTCRKKSW CFVCEFEHLI
401: LKARGGESPL SPIKILSKLQ KIGKHLGPGK EEDAHEFLRC AVDTMQSVFL KEAPAAGPFA EETTLVGLTF GGYLHSKIKC MACLHKSERP ELMMDLTVEI
501: DGDIGSLEEA LAQFTAYEVL DGENRYFCGR CKSYQKAKKK LMILEGPNIL TVVLKRFQSD NFGKLSKPIH FPELLDISPY MSDPNHGDHP VYSLYAVVVH
601: LDAMSTLFSG HYVCYIKTLD GDWFKIDDSN VFPVQLETVL LEGAYMLLYA RDSPRPVSKN GGRKSKQRRN LAAIPSRKGN KKQRDGDNNS LLPRVDWSSG
701: SLSSMFSSSD TTSSCSTKDS SGIENLSDYL FGGVEPVWKW DRHNKSQTFD

Arabidopsis Description

UBP17ubiquitin-specific protease 17 [Source:TAIR;Acc:AT5G65450]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.