Factsheet for VIT_18s0001g07370.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0029g00310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	VIT_05s0029g00310.t01	AT4G13930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52893	Soybean	extracellular, golgi, vacuole	39.67	54.73
KRH62182	Soybean	golgi, vacuole	49.63	53.43
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	32.16	53.24
KRH72452	Soybean	golgi, plasma membrane	44.49	52.61
KRH16837	Soybean	golgi	44.73	52.44
VIT_00s0199g00030.t01	Wine grape	vacuole	37.71	51.16
GSMUA_Achr10P...	Banana	golgi	17.63	48.0
CDX92643	Canola	golgi	39.43	47.68
CDY11021	Canola	golgi	39.02	47.37
Bra019219.1-P	Field mustard	golgi	38.86	47.04
AT4G24560.1	Thale cress	extracellular, golgi	38.69	47.02
CDY03441	Canola	golgi	38.78	46.89
Bra013814.1-P	Field mustard	golgi	38.29	45.98
CDY34291	Canola	golgi	38.29	45.98
GSMUA_Achr5P22990_001	Banana	vacuole	33.14	45.16
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	13.96	44.3
GSMUA_Achr10P...	Banana	nucleus	14.37	43.35
Zm00001d050489_P001	Maize	nucleus	15.76	42.23
GSMUA_Achr7P19010_001	Banana	nucleus	15.67	41.74
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	24.33	40.43
GSMUA_AchrUn_...	Banana	golgi, vacuole	32.57	39.39
OQU80649	Sorghum	nucleus	25.47	38.71
Os08t0478500-01	Rice	plastid	29.71	37.22
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	27.59	36.42
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	26.53	35.91
TraesCS7A01G282200.4	Wheat	plastid	28.9	35.79
TraesCS5B01G243400.1	Wheat	vacuole	26.61	35.59
TraesCS7B01G179000.2	Wheat	plastid	28.73	35.45
TraesCS7D01G280800.4	Wheat	plastid	28.49	35.18
Zm00001d020769_P005	Maize	nucleus	24.57	35.16
TraesCS5A01G246000.3	Wheat	vacuole	26.94	34.3
OQU89635	Sorghum	vacuole	25.31	33.99
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	26.86	33.13
VIT_19s0140g00200.t01	Wine grape	plasma membrane	24.82	30.49
VIT_04s0069g00760.t01	Wine grape	nucleus	19.67	27.89
VIT_07s0141g00230.t01	Wine grape	nucleus	7.84	26.02
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	7.02	24.02
VIT_11s0118g00280.t01	Wine grape	mitochondrion	5.31	22.97
VIT_13s0019g01690.t01	Wine grape	cytosol	9.55	21.16
VIT_19s0093g00560.t01	Wine grape	mitochondrion	10.86	20.94
VIT_04s0008g06860.t01	Wine grape	nucleus	9.31	20.61
VIT_02s0012g01340.t01	Wine grape	nucleus	8.82	20.57
VIT_19s0014g00210.t01	Wine grape	nucleus	13.55	18.57
VIT_11s0118g00290.t01	Wine grape	nucleus	5.22	18.18
VIT_00s0174g00260.t01	Wine grape	nucleus	13.88	17.05

Protein Annotations

EntrezGene:100257420	wikigene:100257420	MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	UniProt:A5B0M8
EMBL:AM442522	MEROPS:C19.096	ProteinID:CAN74012	ProteinID:CAN74012.1	ProteinID:CCB45644	ProteinID:CCB45644.1
ncoils:Coil	EMBL:FN595227	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009056	GO:GO:0009628	GO:GO:0009651
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	GO:GO:0046872	GO:GO:0046983	GO:GO:0048364	GO:GO:0048366	GO:GO:0048367
GO:GO:1901000	InterPro:IPR002893	InterPro:IPR028889	EntrezGene:LOC100257420	wikigene:LOC100257420	PFAM:PF00443
PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	TMHMM:TMhelix	UniParc:UPI000151FC94	InterPro:USP_CS
InterPro:USP_dom	ArrayExpress:VIT_18s0001g07370	EnsemblPlantsGene:VIT_18s0001g07370	EnsemblPlants:VIT_18s0001g07370.t01	RefSeq:XP_002283885	RefSeq:XP_002283885.1
RefSeq:XP_010664383.1	RefSeq:XP_010664384.1	InterPro:Znf_MYND	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:+:5634591..5644243

Molecular Weight (calculated)

133425.0 Da

IEP (calculated)

7.324

GRAVY (calculated)

-0.476

Length

1225 amino acids

Sequence
(BLAST)

0001: MLVPGDLGFS CLALLSLFFP VIGLVIRHKW RVAVARKEEI KRLLILASEE AARAELETAA VSVSPQFQCA VCYCPTTTRC ARCKAVRYCS GKCQIIHWRQ
0101: GHKEECNPPS ITHQIIDESI SSSQKAVKQE KHAIYDNRLE TEGQQCVKPI ETFLSEPAFS KPNCSPEVSC EEDDHIKVEF LADGNVSDST SKSSSTSFSG
0201: FSTSTDRAEP SDNVSVSTTS SELSDDVSVS ESINSYDPEK SDGHKSDDSA MPETISSINT HQNEPFSPEF TGLVDSVNSF TGSSKLNQIK SSCSDVETQC
0301: RSSSSGLSIK SCNERSVAQP STASSGFWEG TLDLNRTRNH AQDDSAQSYA SGADSNISDS ESVLRFSFNL SGSTIPPLHA EVSESKSTVL DDAHPSTLGI
0401: KKPIEGVASS EKISTLGIKK PIEGVASSEK ISTKALKFRN SPSLAFESSN LVDSGPSNDS HKLKSREVKP FSSSVSNAHP SCSTGGDSIS IDAPKARSSS
0501: SLSSERSNHV VNGKSGASHQ LKSREVESLS SGASDPHLSS STEGHSVASM RSGKSTVDSD LHLSSSTRGH PVPNVKSGKV DGVHTVAASS SQIANHSPIV
0601: SNGLKTSVRK VVDQFRPSKL SKSLPLGVGS EIAGRCSDKG LFSYEVFVKL YIWNKVELRP CGLMNCGNSC YANAVLQCLA FTPPLTSYFL QGLHSKSCLK
0701: KEWCFTCEFE SLILKAKEGN SPLSPLGILS QIRNIGSHLG NGKEEDAHEF LRYAIDAMQS VCLKEAGVNA SGSLEEETSL IGLTFGGYLR SKIKCMKCHG
0801: KSERHERMMD LTVEIEGDIG TLEEALHKFT STEILDGENK YQCSRCKSYE KAKKKLTVSE APNILTIALK RFQSGKFGKL NKSIRFPEIL DLAPFMSGTS
0901: DKSPIYRLYA VVVHLDIMNA AFSGHYVCYV KNIQNKWFKI DDSTVKPVEL ERVLTKGAYM LLYARCSPRA PRLIRNAVIP RNRKLEAASS RNIVKNTTFK
1001: LRHDSIDSTA GQSMIHSKPT AYHSRSPVDC PASFESFYSE ETRFPWKQRI VEADSSSDNS SLFTEEGSCS TESNRDSTST EDLSDYIFGY SGRGWSSPWT
1101: NSSDSDTSSS SSSLRSSPLA ELNRYSSCST ETSHSQTDKA KLVMEGDGFW ARPPNGSSKL VDMEGKGDIP FLLSDIAKPC RKLVSNSSSD SYCKETDKEK
1201: VGRVNPLDSM KLGVPSRRST RERTD

Best Arabidopsis Sequence Match ( AT4G24560.1 )
(BLAST)

0001: MLLVLDLGIS SLVLVVSLVL PLIGLFVRHK WRVAAQRREE IRRLLIHASE EAARAELEAS VEFSSVAVSN VFHCPVCYCL ATTRCSRCKA VRYCSGKCQI
0101: IHWRQGHKDE CHPASIVYDS EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL IDKEEAVSVA ETSGSSFSGF
0201: SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR
0301: HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI
0401: SSSTDALSPL DSSNLSHVTL PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA VVQHINSLHG RSGLKASVLK
0501: VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE
0601: KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD
0701: ISTLDDALRR FTRTEILDGE NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG GSEKSHDYKL YGVIVHLDVM
0801: NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR
0901: SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH
1001: QLPLGGER

Arabidopsis Description

UBP16Ubiquitin carboxyl-terminal hydrolase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB51]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.