CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42751
KRH58850

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	KRH42751	AT4G13930.1	23232097
AT4G24560.1	KRH58850	AT4G13930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62182	Soybean	golgi, vacuole	92.23	71.97
KRH16837	Soybean	golgi	61.15	51.96
KRH72452	Soybean	golgi, plasma membrane	60.02	51.45
GSMUA_Achr10P...	Banana	golgi	22.3	44.0
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	18.13	41.71
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	54.73	39.67
AT4G24560.1	Thale cress	extracellular, golgi	41.33	36.41
CDY03441	Canola	golgi	40.65	35.64
CDX92643	Canola	golgi	40.32	35.34
CDY34291	Canola	golgi	40.54	35.29
CDY11021	Canola	golgi	40.09	35.28
Bra013814.1-P	Field mustard	golgi	40.43	35.2
Bra019219.1-P	Field mustard	golgi	39.98	35.08
KRH74502	Soybean	golgi, plasma membrane, vacuole	35.47	33.98
GSMUA_Achr5P22990_001	Banana	vacuole	34.35	33.93
KRH69660	Soybean	golgi	35.59	33.69
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	26.24	31.61
GSMUA_AchrUn_...	Banana	golgi, vacuole	34.01	29.81
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	30.29	29.72
Os08t0478500-01	Rice	plastid	32.66	29.65
TraesCS7A01G282200.4	Wheat	plastid	32.88	29.52
TraesCS7B01G179000.2	Wheat	plastid	33.0	29.51
TraesCS5B01G243400.1	Wheat	vacuole	30.18	29.26
TraesCS7D01G280800.4	Wheat	plastid	32.66	29.23
OQU80649	Sorghum	nucleus	26.46	29.16
KRH15706	Soybean	golgi, plasma membrane, vacuole	23.87	29.08
GSMUA_Achr7P19010_001	Banana	nucleus	14.98	28.91
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	30.07	28.77
Zm00001d020769_P005	Maize	nucleus	27.7	28.74
KRH05330	Soybean	golgi, plasma membrane	23.54	28.36
TraesCS5A01G246000.3	Wheat	vacuole	30.07	27.75
GSMUA_Achr10P...	Banana	nucleus	12.61	27.59
Zm00001d050489_P001	Maize	nucleus	14.08	27.35
OQU89635	Sorghum	vacuole	28.04	27.3
KRH52289	Soybean	golgi	22.41	27.11
KRH61621	Soybean	golgi	22.52	26.95
KRG97572	Soybean	nucleus	10.92	26.29
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	29.17	26.08
KRH72298	Soybean	cytosol, plastid	14.86	25.98
KRH31299	Soybean	nucleus	10.7	25.75
KRH59329	Soybean	nucleus	10.59	25.47
KRH43175	Soybean	nucleus	10.59	25.47
KRH13569	Soybean	endoplasmic reticulum, plasma membrane	26.35	23.66
KRH21804	Soybean	endoplasmic reticulum, plasma membrane	26.13	23.43
KRH05289	Soybean	nucleus	12.16	19.46
KRH15753	Soybean	nucleus	11.82	18.95
KRH20191	Soybean	plastid	12.27	18.35
KRH03615	Soybean	cytosol	12.16	18.24
KRH23933	Soybean	cytosol	10.92	17.93
KRH39864	Soybean	cytosol	10.7	17.86
KRH13611	Soybean	nucleus	12.84	17.48
KRH43852	Soybean	nucleus	12.61	17.47
KRH74417	Soybean	nucleus	11.94	14.66
KRH03060	Soybean	nucleus	14.75	14.51
KRH39541	Soybean	nucleus	11.71	14.07

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	UniProt:A0A0R0JEG4	EMBL:ACUP02003441	EnsemblPlantsGene:GLYMA_06G093500
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	GO:GO:0046872	InterPro:IPR002893
InterPro:IPR028889	EnsemblPlants:KRH52893	ProteinID:KRH52893	ProteinID:KRH52893.1	PFAM:PF00443	PFAM:PF01753
ScanProsite:PS00972	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865	PANTHER:PTHR45492	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	TMHMM:TMhelix	UniParc:UPI0006EDF0FA	InterPro:USP_CS
InterPro:USP_dom	InterPro:Znf_MYND	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:7371904..7377160

Molecular Weight (calculated)

95982.3 Da

IEP (calculated)

6.644

GRAVY (calculated)

-0.365

Length

888 amino acids

Sequence
(BLAST)

001: MRVTGDLGFS SLVLVVVCVV VAVIGFVIRH KWQVSEARKE EIKRLFILAA EETARAEKEA SYEYGTAVSA APTNLCAVCY FPATARCAQC KSVRYCSFEC
101: QTVHWRQGHK LECRPPSTTH QSDGATSDLG SKVVEQGYSG IHVGKSESEG KECKIASERP PIFDICFSPK VSSGKDANIR VESLAEGNIT DSNSELSSNS
201: FSGFSASTGS SDSSDGSSVC ESIISNEHDG SEGHTFVDPT LDIPDNTIDD SMGVTMSSSP KFATLVDSVD GFSTMRKLNH TGPGFSKEES KLASNGNSGS
301: SMWKGKTIEP STVFSGFWDK ALDSRGIKDD TKNDTYPSCS DESTGKKTAS ESSFHFPFST MPPLHVRDTK TNDSVSDDAF PNCIGNNMAS SGSASSENDN
401: MNSSKGRNFS FINSKVSNVR SYVTPSGSES DQLESKESSG PPLSSFSPQP SSVGKNSVCA DALSFHNSQS TGSSNLVVAN GGSTLKSTEI GCLTCELADS
501: NLASVTEEHH SSTKQGNNDI ESGTRAVTSS QVASCSANSK SGLKTSVLKV VDQFRGSNLS KHFPLVVGSD LAGRRNDKSF FPYELFVKLY NSNKVELCPF
601: GLVNCGNSCY ANAVLQCLAF TPPLTAYLLQ GLHLKSCANK KWCFTCEFER LILKSKDTKS AVSPMGIISH LQNIGSQLGN GREEDAHEFL RHVIDTMQSV
701: CLTEAGVNAS GSLEEDTTLM GQTFGGYLRS KIKCMRCGGK SEHQERMMDL TVEIEGEITT LVEALRRFTS TETLDGENKY HCVRCKSYEK AKKKLTVSEA
801: PNVLTVALKR FQSGKFGKLN KPIQFPEILN LAPFMSGTSD KSPIYRLYGV VVHLDVMNAS FSGHYVCYVK NIQNKWSKVD DSVVSPSI

Best Arabidopsis Sequence Match ( AT4G24560.1 )
(BLAST)

0001: MLLVLDLGIS SLVLVVSLVL PLIGLFVRHK WRVAAQRREE IRRLLIHASE EAARAELEAS VEFSSVAVSN VFHCPVCYCL ATTRCSRCKA VRYCSGKCQI
0101: IHWRQGHKDE CHPASIVYDS EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL IDKEEAVSVA ETSGSSFSGF
0201: SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR
0301: HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI
0401: SSSTDALSPL DSSNLSHVTL PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA VVQHINSLHG RSGLKASVLK
0501: VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE
0601: KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD
0701: ISTLDDALRR FTRTEILDGE NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG GSEKSHDYKL YGVIVHLDVM
0801: NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR
0901: SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH
1001: QLPLGGER

Arabidopsis Description

UBP16Ubiquitin carboxyl-terminal hydrolase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB51]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.