CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14400.1	KRH22291	AT2G42580.1	19000166
AT3G14400.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43852	Soybean	nucleus	92.79	94.38
VIT_19s0093g00560.t01	Wine grape	mitochondrion	61.04	62.68
PGSC0003DMT400071055	Potato	mitochondrion	50.15	52.91
Zm00001d000312_P002	Maize	plastid	22.55	52.31
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	54.91	52.19
AT3G14400.1	Thale cress	mitochondrion	50.92	50.23
GSMUA_Achr9P10330_001	Banana	mitochondrion	46.17	48.31
Bra027341.1-P	Field mustard	mitochondrion	50.0	47.45
CDX75770	Canola	mitochondrion, nucleus	47.7	46.84
CDX98449	Canola	mitochondrion	50.0	46.31
CDX97571	Canola	mitochondrion	50.15	46.19
TraesCS1D01G331300.1	Wheat	plastid	40.34	40.71
TraesCS1B01G342600.2	Wheat	plastid	40.34	40.71
HORVU1Hr1G077630.2	Barley	plastid	40.49	40.68
TraesCS1A01G329200.2	Wheat	plastid	40.49	40.68
Os05t0510300-01	Rice	plastid	40.03	40.53
KXG22316	Sorghum	plastid	40.34	38.85
Zm00001d010710_P002	Maize	plastid	39.88	38.07
Zm00001d000313_P001	Maize	nucleus	17.02	30.0
KRH72298	Soybean	cytosol, plastid	21.93	28.15
KRH43175	Soybean	nucleus	14.72	26.02
KRH59329	Soybean	nucleus	14.72	26.02
KRH31299	Soybean	nucleus	14.57	25.75
KRG97572	Soybean	nucleus	14.57	25.75
KRH15706	Soybean	golgi, plasma membrane, vacuole	21.01	18.79
KRH05330	Soybean	golgi, plasma membrane	21.01	18.59
KRH52289	Soybean	golgi	20.86	18.53
KRH03060	Soybean	nucleus	25.46	18.38
KRH61621	Soybean	golgi	20.71	18.19
KRH05289	Soybean	nucleus	14.72	17.3
KRH74417	Soybean	nucleus	18.86	17.01
KRH15753	Soybean	nucleus	14.42	16.97
KRH39864	Soybean	cytosol	13.8	16.92
KRH39541	Soybean	nucleus	19.17	16.91
KRH23933	Soybean	cytosol	13.8	16.64
KRH03615	Soybean	cytosol	14.72	16.22
KRH20191	Soybean	plastid	14.72	16.16
KRH21804	Soybean	endoplasmic reticulum, plasma membrane	22.24	14.65
KRH13569	Soybean	endoplasmic reticulum, plasma membrane	21.93	14.46
KRH69660	Soybean	golgi	19.63	13.65
KRH72452	Soybean	golgi, plasma membrane	21.32	13.42
KRH74502	Soybean	golgi, plasma membrane, vacuole	19.02	13.38
KRH16837	Soybean	golgi	20.86	13.01
KRH52893	Soybean	extracellular, golgi, vacuole	17.48	12.84
KRH62182	Soybean	golgi, vacuole	21.47	12.3

Protein Annotations

EntrezGene:100820436	MapMan:19.2.3.1.1.11	Gene3D:3.90.70.10	EMBL:ACUP02009764	MEROPS:C19.A13	EnsemblPlantsGene:GLYMA_15G251100
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
InterPro:IPR028889	UniProt:K7MDV0	EnsemblPlants:KRH13611	ProteinID:KRH13611	ProteinID:KRH13611.1	PFAM:PF00443
ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR45511	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF54001	UniParc:UPI000233BB8D	InterPro:USP_CS	InterPro:USP_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:+:47920926..47934529

Molecular Weight (calculated)

71961.0 Da

IEP (calculated)

8.892

GRAVY (calculated)

-0.476

Length

652 amino acids

Sequence
(BLAST)

001: MALQMTWQPS LLSQKRKTGT GPPLGLRNLG NSCYLNSVLQ CLTYTPPLAN FCLRLQHSSL CDSSASSCPF CILEKQIARS LRLDLTYDAP SKIQSCIRIF
101: AENFRCGRQE DAHEFLRYVI DACHNTCLRL KKLRRKGAEA NGGGGGDTGG GTVVKEIFGG ALQSQVKCLC CGYESNKVDE IMDISLDVFH SNSLKDSMQK
201: FFQPEVLDGN NKYKCDSCKK LVAAKKQMSI LQAPNILVIQ LKRFEGILGG KIDKAVAFEE VLVLSSFMCK ASQDPQPEYK LFGTIVHSGY SPESGHYYAY
301: IKDAMGRWYC CDDSCVTVAT LQEVLSEKVY ILFFSRTNQR PVASCNSLAS NGVKPHSNGS QTSECPKVGV PPKAVHVKSN SELSPCKDMP SVSKTAKAPS
401: SSRVKFDING SSSKRNPAPV SVNGKVDVSR NQPSVINGHV KDSVSLENGK KDSSLPTSNG IDKNKVAVDK LKRKESTVTN GHTGNQTVDI HSVKSDLKED
501: TDRSRVIAGR VPDNFKHESN DLNNKPTILG NKRKLQEDPC ILLAHDGQSQ ARVQELKDIL GKEAKSVLRS CGWTDKVYEF MRSKKLHAQE AGNLTNGDEI
601: RKLLIGDAQG AFISKIPESL KQDMIERLRS FSQEKKYNFQ DLDPRMNVDL SC

Best Arabidopsis Sequence Match ( AT3G14400.1 )
(BLAST)

001: MGFKLQMSWM PSLLSQKRRN GPPLGLRNLG NTCYLNSVLQ CLTFTPPLAN FCLTHKHSSH CDTYVDGERK RDCPFCIVEK RIARSLSVDL TTDAPNKISS
101: CLKIFAEHFK LGRQEDAHEF LRYVIDACHN TSLRLKKLRY NGNEPFNGNS VVKEIFGGAL QSQVKCLSCG AESNKADEIM DISLEILQSS SVKESLQKFF
201: QSEILDGNNK YRCESCEKLV TARKQMSILQ APNILVIQLK RFGGIFGGKI DKAISFGEIL VLSNFMSKAS KDPQPEYKLF GIIVHSGFSP ESGHYYAYVK
301: DSLGRWYCCN DSFVSLSTLQ EVLSEKAYIL FFSRSNQRPA SAKTLVTSNG TTSHEVNGCE TSNPQKFIGP LNGFNMKPQA EQSFQKGNLA SSKPHKFIRP
401: KPRAEQAPLE DNLLSSKVEK APLRPHAKVS ISVNLGAKRV SPVNGRLSFH QDENIAPKAN KENSVSVLPT KVNSGTERKF GTENGGNGVK ENGSAPGSSN
501: HKVALHPHER SNGSSNGGDH HKDNLHPCGS NGSQNGTAHP ETERNGVSTT QSKGLCSSTK EDPCILLRKD ESSRNELEAI KESLKKDALS HLRSCGWYDK
601: VLISMHAKKR LRTEQSGGED GSDLKRRLIE DVKSSLKSQI PEELKADLVN RIWEISKKKY S

Arabidopsis Description

UBP25Ubiquitin carboxyl-terminal hydrolase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.