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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 5
  • nucleus 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:golgi, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra027341.1-P Field mustard mitochondrion 79.88 76.86
CDX75770 Canola mitochondrion, nucleus 76.7 76.36
CDX97571 Canola mitochondrion 78.67 73.45
CDX98449 Canola mitochondrion 78.21 73.44
Zm00001d000312_P002 Maize plastid 22.39 52.67
VIT_19s0093g00560.t01 Wine grape mitochondrion 50.53 52.6
KRH43852 Soybean nucleus 50.53 52.11
KRH13611 Soybean nucleus 50.23 50.92
PGSC0003DMT400071055 Potato mitochondrion 45.69 48.87
Solyc07g056520.2.1 Tomato cytosol, golgi, nucleus, plastid 49.47 47.67
GSMUA_Achr9P10330_001 Banana mitochondrion 41.15 43.66
Os05t0510300-01 Rice plastid 37.07 38.04
TraesCS1D01G331300.1 Wheat plastid 36.76 37.62
TraesCS1B01G342600.2 Wheat plastid 36.76 37.62
TraesCS1A01G329200.2 Wheat plastid 36.91 37.6
HORVU1Hr1G077630.2 Barley plastid 36.76 37.44
KXG22316 Sorghum plastid 37.37 36.48
Zm00001d010710_P002 Maize plastid 36.46 35.29
AT4G39910.1 Thale cress nucleus 15.13 26.95
AT2G22310.1 Thale cress nucleus 14.67 26.58
Zm00001d000313_P001 Maize nucleus 14.07 25.14
AT4G31670.1 Thale cress endoplasmic reticulum, golgi 19.21 20.13
AT2G24640.1 Thale cress endoplasmic reticulum, vacuole 20.12 19.79
AT5G57990.1 Thale cress nucleus 21.79 16.76
AT5G65450.2 Thale cress endoplasmic reticulum, golgi, mitochondrion, nucleus 18.76 16.53
AT5G10790.1 Thale cress cytosol 13.77 16.34
AT4G17895.1 Thale cress nucleus 16.94 16.12
AT4G30890.2 Thale cress cytosol 13.01 15.61
AT5G46740.1 Thale cress nucleus, plastid 17.1 15.44
AT1G17110.2 Thale cress endoplasmic reticulum, plasma membrane 19.52 13.9
AT4G24560.1 Thale cress extracellular, golgi 19.82 13.0
Protein Annotations
MapMan:19.2.3.1.1.11Gene3D:3.90.70.10EntrezGene:820662UniProt:A0A178VGL4ProteinID:AEE75513.1EMBL:AF302673
ArrayExpress:AT3G14400EnsemblPlantsGene:AT3G14400RefSeq:AT3G14400TAIR:AT3G14400RefSeq:AT3G14400-TAIR-GEnsemblPlants:AT3G14400.1
TAIR:AT3G14400.1EMBL:AY064992Unigene:At.6074ProteinID:BAB01045.1EMBL:BT021128MEROPS:C19.A13
ncoils:CoilGO:GO:0003674GO:GO:0003824GO:GO:0006464GO:GO:0006508GO:GO:0006511
GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0008234GO:GO:0009056GO:GO:0009987
GO:GO:0016579GO:GO:0016787GO:GO:0019538GO:GO:0036459InterPro:IPR028889RefSeq:NP_566486.1
ProteinID:OAP04808.1PFAM:PF00443PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281
ScanProsite:PS00972ScanProsite:PS00973PFscan:PS50235PANTHER:PTHR45511InterPro:Papain_like_cys_pep_sfInterPro:Peptidase_C19_UCH
UniProt:Q9FPS2SUPFAM:SSF54001Symbol:UBP25UniParc:UPI00000A148DInterPro:USP_CSInterPro:USP_dom
Description
UBP25Ubiquitin carboxyl-terminal hydrolase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS2]
Coordinates
chr3:-:4811486..4815515
Molecular Weight (calculated)
73297.1 Da
IEP (calculated)
9.456
GRAVY (calculated)
-0.594
Length
661 amino acids
Sequence
(BLAST)
001: MGFKLQMSWM PSLLSQKRRN GPPLGLRNLG NTCYLNSVLQ CLTFTPPLAN FCLTHKHSSH CDTYVDGERK RDCPFCIVEK RIARSLSVDL TTDAPNKISS
101: CLKIFAEHFK LGRQEDAHEF LRYVIDACHN TSLRLKKLRY NGNEPFNGNS VVKEIFGGAL QSQVKCLSCG AESNKADEIM DISLEILQSS SVKESLQKFF
201: QSEILDGNNK YRCESCEKLV TARKQMSILQ APNILVIQLK RFGGIFGGKI DKAISFGEIL VLSNFMSKAS KDPQPEYKLF GIIVHSGFSP ESGHYYAYVK
301: DSLGRWYCCN DSFVSLSTLQ EVLSEKAYIL FFSRSNQRPA SAKTLVTSNG TTSHEVNGCE TSNPQKFIGP LNGFNMKPQA EQSFQKGNLA SSKPHKFIRP
401: KPRAEQAPLE DNLLSSKVEK APLRPHAKVS ISVNLGAKRV SPVNGRLSFH QDENIAPKAN KENSVSVLPT KVNSGTERKF GTENGGNGVK ENGSAPGSSN
501: HKVALHPHER SNGSSNGGDH HKDNLHPCGS NGSQNGTAHP ETERNGVSTT QSKGLCSSTK EDPCILLRKD ESSRNELEAI KESLKKDALS HLRSCGWYDK
601: VLISMHAKKR LRTEQSGGED GSDLKRRLIE DVKSSLKSQI PEELKADLVN RIWEISKKKY S
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.