Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 4
- vacuole 3
- plasma membrane 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75188 | Canola | vacuole | 77.97 | 80.52 |
| CDX68773 | Canola | nucleus, plasma membrane | 78.29 | 80.46 |
| Bra011290.1-P | Field mustard | vacuole | 77.97 | 80.39 |
| AT2G24640.1 | Thale cress | endoplasmic reticulum, vacuole | 69.73 | 65.48 |
| PGSC0003DMT400076065 | Potato | endoplasmic reticulum | 33.12 | 60.06 |
| GSMUA_Achr7P05090_001 | Banana | vacuole | 43.9 | 59.31 |
| KRH15706 | Soybean | golgi, plasma membrane, vacuole | 53.57 | 46.36 |
| KRH61621 | Soybean | golgi | 54.04 | 45.96 |
| KRH52289 | Soybean | golgi | 53.25 | 45.78 |
| KRH05330 | Soybean | golgi, plasma membrane | 52.93 | 45.32 |
| Solyc12g096430.1.1 | Tomato | nucleus, plastid | 42.63 | 43.25 |
| Solyc08g069050.2.1 | Tomato | extracellular | 50.87 | 41.31 |
| VIT_04s0069g00760.t01 | Wine grape | nucleus | 49.45 | 36.11 |
| Zm00001d036707_P006 | Maize | plasma membrane | 45.64 | 30.06 |
| KXG20513 | Sorghum | golgi, plasma membrane | 45.48 | 29.41 |
| Os06t0654000-01 | Rice | cytosol, nucleus | 42.63 | 28.5 |
| AT5G65450.2 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, nucleus | 33.6 | 28.27 |
| TraesCS7A01G498400.1 | Wheat | extracellular, golgi, plasma membrane | 44.06 | 26.23 |
| TraesCS7D01G485600.1 | Wheat | golgi, plasma membrane | 44.22 | 26.2 |
| TraesCS7B01G405400.1 | Wheat | golgi, plasma membrane | 44.53 | 26.14 |
| GSMUA_Achr1P10260_001 | Banana | endoplasmic reticulum, plasma membrane | 46.75 | 26.08 |
| HORVU7Hr1G111430.5 | Barley | cytosol, nucleus | 43.42 | 26.07 |
| AT2G22310.1 | Thale cress | nucleus | 15.06 | 26.03 |
| AT4G39910.1 | Thale cress | nucleus | 15.06 | 25.61 |
| AT1G17110.2 | Thale cress | endoplasmic reticulum, plasma membrane | 35.34 | 24.03 |
| AT4G24560.1 | Thale cress | extracellular, golgi | 33.28 | 20.83 |
| AT3G14400.1 | Thale cress | mitochondrion | 20.13 | 19.21 |
| AT5G10790.1 | Thale cress | cytosol | 16.64 | 18.85 |
| AT4G30890.2 | Thale cress | cytosol | 15.53 | 17.79 |
| AT4G17895.1 | Thale cress | nucleus | 18.23 | 16.55 |
| AT5G46740.1 | Thale cress | nucleus, plastid | 18.38 | 15.85 |
| AT5G57990.1 | Thale cress | nucleus | 20.29 | 14.9 |
Protein Annotations
| MapMan:19.2.3.1.1.7 | Gene3D:3.30.60.180 | Gene3D:3.90.70.10 | EntrezGene:829295 | UniProt:A0A178UXK6 | ProteinID:AEE85943.1 |
| EMBL:AK175467 | EMBL:AK176703 | ArrayExpress:AT4G31670 | EnsemblPlantsGene:AT4G31670 | RefSeq:AT4G31670 | TAIR:AT4G31670 |
| RefSeq:AT4G31670-TAIR-G | EnsemblPlants:AT4G31670.1 | TAIR:AT4G31670.1 | EMBL:AY142532 | Unigene:At.31726 | MEROPS:C19.A08 |
| ProteinID:CAA19756.1 | ProteinID:CAB79885.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0006464 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 |
| GO:GO:0008234 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016579 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0036459 | GO:GO:0046872 | InterPro:IPR002893 | InterPro:IPR028889 |
| RefSeq:NP_194895.1 | ProteinID:OAO98343.1 | PFAM:PF00443 | PFAM:PF01753 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00972 | ScanProsite:PS01360 |
| PFscan:PS50235 | PFscan:PS50865 | PANTHER:PTHR45499 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | UniProt:Q67XW5 |
| SUPFAM:SSF144232 | SUPFAM:SSF54001 | TMHMM:TMhelix | Symbol:UBP18 | UniParc:UPI00000AC14E | InterPro:USP_CS |
| InterPro:USP_dom | InterPro:Znf_MYND | SEG:seg | : | : | : |
Description
UBP18Ubiquitin carboxyl-terminal hydrolase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q67XW5]
Coordinates
chr4:-:15335743..15339613
Molecular Weight (calculated)
70756.2 Da
IEP (calculated)
4.731
GRAVY (calculated)
-0.381
Length
631 amino acids
Sequence
(BLAST)
(BLAST)
001: MHEVGFPLDL SVFTRLIATL FFLAVGVFYF LKNTAAKYFD IGAAAAGGFD RDFMAVDAED CSVCGNFSTK KCSRCKSVRY CSAECQRSDW SSGHQRNCRD
101: YGITTLTPSA KNGLRFRASP FGDSSASSIA LISERGQNKS SLKPREVLFP YEEFVEYFNW DNPELAPCGL MNCGNSCFAN VILQCLSWTR PLVAYLLEKG
201: HKRECMRNDW CFLCEFQTHV ERASQSRFPF SPMNIISRLT NIGGTLGYGR QEDAHEFMRY AIDMMQSVCL DEFGGEKIVP PRSQETTLIQ YIFGGLLQSQ
301: VQCTVCNHVS DQYENMMDLI VEMHGDAGSL EECLDQFTAE EWLHGDNMYK CDRCSDYVKA CKRLTIRRAP NILTIALKRY QGGRYGKLNK RISFPETLDL
401: NPYMSEGGDG SDVYKLYAVI VHLDMLNASF FGHYICYIKD FCGNWYRIDD SEIESVELED VLSQRAYMLL YSRIQARSSS SCLRSEVKDE KKTDTLDTES
501: CVKELVESSM VGAIESRSST HATIEDPVCE QSPSPSPSPS PSPSPSPSPS VLASECCSEV ERIDTLDSES NSSIDDSATD HQEDVANGNK DPEVKYQAAD
601: SWSDPTTSTP LVCTKSKPPV RDMDTKMIDA Q
101: YGITTLTPSA KNGLRFRASP FGDSSASSIA LISERGQNKS SLKPREVLFP YEEFVEYFNW DNPELAPCGL MNCGNSCFAN VILQCLSWTR PLVAYLLEKG
201: HKRECMRNDW CFLCEFQTHV ERASQSRFPF SPMNIISRLT NIGGTLGYGR QEDAHEFMRY AIDMMQSVCL DEFGGEKIVP PRSQETTLIQ YIFGGLLQSQ
301: VQCTVCNHVS DQYENMMDLI VEMHGDAGSL EECLDQFTAE EWLHGDNMYK CDRCSDYVKA CKRLTIRRAP NILTIALKRY QGGRYGKLNK RISFPETLDL
401: NPYMSEGGDG SDVYKLYAVI VHLDMLNASF FGHYICYIKD FCGNWYRIDD SEIESVELED VLSQRAYMLL YSRIQARSSS SCLRSEVKDE KKTDTLDTES
501: CVKELVESSM VGAIESRSST HATIEDPVCE QSPSPSPSPS PSPSPSPSPS VLASECCSEV ERIDTLDSES NSSIDDSATD HQEDVANGNK DPEVKYQAAD
601: SWSDPTTSTP LVCTKSKPPV RDMDTKMIDA Q
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.