Factsheet for Solyc12g096430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P05090_001	Banana	vacuole	39.39	52.46
Bra007837.1-P	Field mustard	nucleus	36.17	44.12
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	43.57	42.95
AT4G31670.1	Thale cress	endoplasmic reticulum, golgi	43.25	42.63
CDY45587	Canola	endoplasmic reticulum, vacuole	43.25	42.5
CDY34761	Canola	endoplasmic reticulum, vacuole	43.41	41.93
CDY20330	Canola	vacuole	43.25	41.84
CDX76801	Canola	endoplasmic reticulum, golgi, vacuole	43.25	41.32
Bra011290.1-P	Field mustard	vacuole	40.51	41.18
CDX75188	Canola	vacuole	40.19	40.92
CDX68773	Canola	nucleus, plasma membrane	40.35	40.88
AT2G24640.1	Thale cress	endoplasmic reticulum, vacuole	43.57	40.33
KRH15706	Soybean	golgi, plasma membrane, vacuole	44.69	38.13
Solyc08g069050.2.1	Tomato	extracellular	46.62	37.32
KRH05330	Soybean	golgi, plasma membrane	44.05	37.18
KRH61621	Soybean	golgi	44.21	37.06
KRH52289	Soybean	golgi	43.09	36.51
VIT_04s0069g00760.t01	Wine grape	nucleus	45.18	32.52
KXG20513	Sorghum	golgi, plasma membrane	43.89	27.97
Zm00001d036707_P006	Maize	plasma membrane	42.44	27.56
Os06t0654000-01	Rice	cytosol, nucleus	40.84	26.91
Solyc08g048410.1.1	Tomato	cytosol	7.07	26.35
HORVU7Hr1G111430.5	Barley	cytosol, nucleus	42.6	25.21
TraesCS7D01G485600.1	Wheat	golgi, plasma membrane	43.09	25.16
TraesCS7B01G405400.1	Wheat	golgi, plasma membrane	42.93	24.84
TraesCS7A01G498400.1	Wheat	extracellular, golgi, plasma membrane	42.12	24.72
Solyc09g015600.1.1	Tomato	extracellular	12.38	24.68
Solyc07g007640.1.1	Tomato	cytosol	9.32	24.47
Solyc04g056290.2.1	Tomato	nucleus	14.47	24.39
Solyc01g105240.2.1	Tomato	nucleus	14.31	24.32
Solyc09g015580.1.1	Tomato	vacuole	12.06	24.12
GSMUA_Achr1P10260_001	Banana	endoplasmic reticulum, plasma membrane	41.8	22.99
Solyc08g048310.1.1	Tomato	extracellular, vacuole	7.56	21.76
Solyc08g023360.1.1	Tomato	extracellular	8.52	20.87
Solyc10g047480.1.1	Tomato	nucleus	15.92	20.62
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	31.99	20.6
Solyc08g068810.2.1	Tomato	cytosol	18.17	20.58
Solyc08g005080.1.1	Tomato	cytosol	15.92	20.41
Solyc09g017980.1.1	Tomato	extracellular	6.75	20.29
Solyc09g015610.1.1	Tomato	cytosol	4.02	19.84
Solyc08g021790.1.1	Tomato	extracellular, vacuole	7.4	19.66
Solyc09g017990.1.1	Tomato	plastid	14.95	19.5
Solyc08g021830.1.1	Tomato	cytosol	10.61	18.86
Solyc01g068240.2.1	Tomato	cytosol	15.92	18.57
Solyc11g065210.1.1	Tomato	cytosol	15.92	18.54
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	19.29	17.49
Solyc04g076210.2.1	Tomato	nucleus	30.87	17.47
Solyc02g005600.1.1	Tomato	vacuole	13.67	17.42
Solyc07g005530.2.1	Tomato	nucleus	22.99	15.49
Solyc08g076910.2.1	Tomato	nucleus	17.68	15.41

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	MEROPS:C19.A09	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	GO:GO:0046872	InterPro:IPR002893	InterPro:IPR028889
UniProt:K4DHB6	PFAM:PF00443	PFAM:PF01753	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865
PANTHER:PTHR45499	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	EnsemblPlantsGene:Solyc12g096430.1
EnsemblPlants:Solyc12g096430.1.1	UniParc:UPI0002769D38	InterPro:USP_dom	InterPro:Znf_MYND	:	:

Description

No Description!

Coordinates

chr12:-:65356074..65363689

Molecular Weight (calculated)

70314.1 Da

IEP (calculated)

5.592

GRAVY (calculated)

-0.417

Length

622 amino acids

Sequence
(BLAST)

001: MGLPSACAVC GNATSKRCSR CKMVNYCSDA CQRSDWNSGH KYGCRDFQSS VKGNSEQSAS TLQRRYMFGT SFVPFGGKNN QELFPYEEFL NYFYWGGSGY
101: PPRRLINCGN SCFANVVLQC LTQTRPLLAY LLERGHRREC RSNGWCFLCE FQLHVEQCTW CHDPFSPIDV LSGLPNIGGN LSCGKQEDAH EFMRFAIDTM
201: QSAVLAEFDG DKAEPLSAQE TTIIQHIFGG RLQSQVACTA CGNHSNQFEN MMDLTVGING EADSLEKCLD QFTAEECMDG EDMYKCDRCN DYVKAWKRLT
301: ILEAPNILTI ALKRFKSGDT PGKLNNRVTF PESLDLNPNM SETGDGNDHF NLYAVIVHED MSNALHCGHY ICYIKDLTEN WYRADDTEVI DVGIDDVLVQ
401: QAYMLFYSRH LARPTSLYPL ESLNKPDKAE GKQHSTVAPL ECHKTTVSPA ICANPGSLPT DKKSVIFREE EELTSVTNFE GDTVDSGASR KVLQELQDVR
501: ESSADRETYL RKLSATYSFI DSCSEAVMQR AEGRYPVSDN EEKSEMWRSV TYDSLFGSSI LERILVKCRM ILLPMPLTEA HLKQMHPRSL AYLVKVHNLV
601: YSVNEHTCSH LTRLYTLIWE SK

Best Arabidopsis Sequence Match ( AT2G24640.1 )
(BLAST)

001: MHEVGLFVDL NSFTQLILTL FFVSIGLLYF VKRTAAKYFE VGGGSGGFDR DHRRDFMVSD TAECSVCGKA TTKKCSRCKS VRYCSAACQT SDWKSGHKLK
101: CKGFRSTDSS PVRRDDIDFE ASLFGNRSAS KKTRIALVPQ QSQSKATLKP TDVLFPYESF VRYYNWDRPI MAPCGLTNCG NSCFANVVLQ CLSWTRPLVA
201: YLLERGHKRE CRRNDWCFLC EFENHLDRAN YSRFPFSPMN IISRLPNIGG NLGYGRQEDA HELMRFAIDM MQSVCLDEFG GEKVVPPRAQ ETTLIQYIFG
301: GLLQSQVQCT ACSNVSDQYE NMMDLTVEIH GDAVSLEECL DQFTAKEWLQ GDNLYKCDRC DDYVKACKRL SIRCAPNILT IALKRFQGGR FGKLNKRISF
401: PETFDLGPYM SGGGEGSDVY KLYAVIVHLD MLNASFFGHY ICYVKDFRGN WYRIDDSEVE KVELEDVLSQ RAYMLLYSRV QPRPSNLRSE ESQDEKKTDT
501: LNTESNQDGS VESSGVGTND TSVSSLCNGI ISHSEDPEYE KESSLSASVP VSEEGKEVDV KVDTVDSESN RSIDMEHDSG TDHQEEEANG KEDPTVENLA
601: VDSSCLDITT PSPSAATEFI PQENERSDTE SKPLEKEHSD TESNKPLEKE HLDSESKPLE KEHSDTEMID AQ

Arabidopsis Description

UBP19Ubiquitin carboxyl-terminal hydrolase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA1]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.