Factsheet for Solyc10g047480.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400089939	Potato	cytosol	65.62	84.22
PGSC0003DMT400093121	Potato	cytosol	48.33	80.28
Solyc08g005080.1.1	Tomato	cytosol	59.38	58.76
Solyc09g015580.1.1	Tomato	vacuole	36.04	55.63
Solyc08g021830.1.1	Tomato	cytosol	39.79	54.57
Solyc08g048410.1.1	Tomato	cytosol	18.96	54.49
Solyc09g015600.1.1	Tomato	extracellular	35.0	53.85
Solyc08g021790.1.1	Tomato	extracellular, vacuole	25.83	52.99
Solyc08g023360.1.1	Tomato	extracellular	27.29	51.57
Solyc09g017990.1.1	Tomato	plastid	50.21	50.52
Solyc09g015610.1.1	Tomato	cytosol	13.12	50.0
Solyc02g005600.1.1	Tomato	vacuole	50.62	49.8
Solyc09g017980.1.1	Tomato	extracellular	21.46	49.76
Solyc08g048310.1.1	Tomato	extracellular, vacuole	22.29	49.54
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	26.25	35.8
Solyc08g076910.2.1	Tomato	nucleus	46.04	30.95
VIT_02s0012g01340.t01	Wine grape	nucleus	30.62	28.0
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	30.21	24.74
Solyc01g105240.2.1	Tomato	nucleus	18.54	24.32
KRH39541	Soybean	nucleus	37.29	24.22
KRH74417	Soybean	nucleus	36.46	24.2
Solyc04g056290.2.1	Tomato	nucleus	18.33	23.85
Solyc07g007640.1.1	Tomato	cytosol	11.67	23.63
CDX87681	Canola	nucleus	30.83	23.49
CDX76553	Canola	cytosol	30.83	23.05
Bra021031.1-P	Field mustard	nucleus	30.83	23.05
Zm00001d051513_P001	Maize	nucleus	27.71	22.5
CDY37145	Canola	cytosol	30.83	22.22
AT4G17895.1	Thale cress	nucleus	32.08	22.16
Bra022060.1-P	Field mustard	nucleus	30.42	21.95
CDY58499	Canola	endoplasmic reticulum	30.83	20.53
AT5G46740.1	Thale cress	nucleus, plastid	30.83	20.22
Bra025000.1-P	Field mustard	endoplasmic reticulum	30.62	20.16
HORVU6Hr1G067180.4	Barley	nucleus	30.83	20.03
TraesCS6A01G264800.1	Wheat	nucleus	30.42	19.89
TraesCS6D01G250100.1	Wheat	nucleus	30.42	19.76
OQU85579	Sorghum	nucleus	30.42	19.6
TraesCS6B01G291800.1	Wheat	nucleus	30.0	19.49
CDX77686	Canola	endoplasmic reticulum	30.21	19.21
Zm00001d017686_P002	Maize	mitochondrion, nucleus	28.54	18.51
Solyc08g068810.2.1	Tomato	cytosol	18.33	16.03
Solyc12g096430.1.1	Tomato	nucleus, plastid	20.62	15.92
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	21.88	15.31
Solyc11g065210.1.1	Tomato	cytosol	16.88	15.17
Solyc01g068240.2.1	Tomato	cytosol	15.83	14.26
Solyc07g005530.2.1	Tomato	nucleus	26.88	13.98
Solyc08g069050.2.1	Tomato	extracellular	21.25	13.13
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	24.38	12.11
Solyc04g076210.2.1	Tomato	nucleus	21.46	9.37

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:K4D010	PFAM:PF00443	ScanProsite:PS00972
ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF54001	EnsemblPlantsGene:Solyc10g047480.1	EnsemblPlants:Solyc10g047480.1.1	UniParc:UPI0002769D5F	InterPro:USP_CS	InterPro:USP_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:40880861..40883981

Molecular Weight (calculated)

54804.7 Da

IEP (calculated)

5.056

GRAVY (calculated)

-0.352

Length

480 amino acids

Sequence
(BLAST)

001: MEKATAENLQ NSSDRKAQKT KETIKNNLDF PLVKIEAEEK SKQKDSGLDE RSPTWGQPDS LTISFESDSE SMAYTTSSDS SEISYSYFVE SPPLAVVPIS
101: FIEPEDFKES DEKPMPTEHR PLKMVGVGMR NLGNTCFFNA VVQCFMHSVV LLQLLALFDH VSPCDTHLTG FCVVCMIRQI VDLSMSSGSD NVISNKIFSH
201: LNDFSPTFHP NQQEDAHEFL QCFLNKLESC CYNLDPRDNI VKKAFGGHLV SMLRCFNCCH LSITPEPLID LSLEIVDVDC VPKALESFTK IENIEFFCEK
301: CKTQGPFEKQ LLIDHAPSIA TLCLKRFVND GFDIQKVDKH VSFPLELDMF HYTNKINNEE MKYDLYAVIV HSGFSISSGH YYSFIRCNPN EWYKFDDEQV
401: HWVHEDHVLE EQAYILFYTK RHTLWFTDYT QIHKPFVNLV IPSTSSCIPN NHASDVGESN HVADDTSPKA TPNKRIKGDY

Best Arabidopsis Sequence Match ( AT4G17895.1 )
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Arabidopsis Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.