Factsheet for PGSC0003DMT400089939

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g047480.1.1	Tomato	nucleus	84.22	65.62
PGSC0003DMT400093121	Potato	cytosol	49.73	64.36
PGSC0003DMT400088084	Potato	cytosol	47.33	52.68
PGSC0003DMT400046008	Potato	cytosol	72.19	50.85
PGSC0003DMT400093591	Potato	cytosol	25.13	37.45
PGSC0003DMT400096420	Potato	mitochondrion	14.44	36.24
PGSC0003DMT400045160	Potato	nucleus	44.38	23.31
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	21.39	22.73
PGSC0003DMT400086994	Potato	cytosol	7.75	21.8
VIT_02s0012g01340.t01	Wine grape	nucleus	25.67	18.29
PGSC0003DMT400033175	Potato	mitochondrion	8.02	17.96
KRH74417	Soybean	nucleus	33.96	17.57
KRH39541	Soybean	nucleus	34.22	17.32
PGSC0003DMT400032703	Potato	nucleus	16.58	16.94
CDX87681	Canola	nucleus	28.34	16.83
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	26.2	16.72
CDX76553	Canola	cytosol	27.81	16.2
Bra021031.1-P	Field mustard	nucleus	27.81	16.2
AT4G17895.1	Thale cress	nucleus	29.68	15.97
CDY37145	Canola	cytosol	28.34	15.92
Zm00001d051513_P001	Maize	nucleus	25.13	15.91
Bra022060.1-P	Field mustard	nucleus	28.07	15.79
CDY58499	Canola	endoplasmic reticulum	29.68	15.4
Bra025000.1-P	Field mustard	endoplasmic reticulum	29.68	15.23
PGSC0003DMT400038315	Potato	nucleus	17.91	14.96
OQU85579	Sorghum	nucleus	28.88	14.5
CDX77686	Canola	endoplasmic reticulum	29.14	14.44
AT5G46740.1	Thale cress	nucleus, plastid	28.07	14.34
HORVU6Hr1G067180.4	Barley	nucleus	27.81	14.07
TraesCS6A01G264800.1	Wheat	nucleus	27.27	13.9
TraesCS6D01G250100.1	Wheat	nucleus	27.27	13.8
TraesCS6B01G291800.1	Wheat	nucleus	26.74	13.53
Zm00001d017686_P002	Maize	mitochondrion, nucleus	26.47	13.38
PGSC0003DMT400071055	Potato	mitochondrion	20.86	12.62
PGSC0003DMT400033182	Potato	cytosol	4.55	12.06
PGSC0003DMT400033184	Potato	cytosol	5.61	11.48
PGSC0003DMT400034298	Potato	cytosol	15.78	11.05
PGSC0003DMT400033173	Potato	mitochondrion	9.89	10.42
PGSC0003DMT400028924	Potato	nucleus	24.87	10.04
PGSC0003DMT400076065	Potato	endoplasmic reticulum	5.88	6.32
PGSC0003DMT400063184	Potato	plastid	0.53	0.9

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:M1DJ86	PFAM:PF00443	EnsemblPlantsGene:PGSC0003DMG400039510
PGSC:PGSC0003DMG400039510	EnsemblPlants:PGSC0003DMT400089939	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033
PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI000295FF16	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400039510]

Coordinates

chr10:+:30276524..30279681

Molecular Weight (calculated)

42470.4 Da

IEP (calculated)

4.915

GRAVY (calculated)

-0.314

Length

374 amino acids

Sequence
(BLAST)

001: MEKAIAENLQ NSPDCEALKT EEIIKNNVDF SLVKIEVEEK LKEKDSGLDE RSPVRVEPDS LTISVESDSE SMGYTIFSDS SELSYSDCAE LLPLTVVPIS
101: FIEPEDFKES DVKTMPIEHM PLKMVGVGMC NLGNTCFLNA VMQCFMHNVV LLQLLASFDH VSPCDKPRDN IVKEAFGGRL VSMCSKSIEF SCEKCKTQGP
201: FEKQLLIDRA PSVATLCLKR FNNDGFVVQK VDKHVSFPLE LDMLHYTNKI NNEEMKYDLY AVIVHLGFSI SSGHYYSFIR CNPNEWYKFN DEHVHWVHED
301: HVLAEQAYIL FYAKRGTLWF SDYRQIHQPF VNLVIPSTSS CIPNNHASDV GESNHAADDT SPKPTPNKRI KGDY

Best Arabidopsis Sequence Match ( AT5G46740.2 )
(BLAST)

001: MQALRDHIEL ALRSSGYGIN IDRFRDNLTY FSSDFMINHQ EDAHEFLQSF LDKLERCCLD PKNQLGSVSS QDLNIVDNVF GGGLMSTLCC CNCNSVSNTF
101: EPSLGWSLEI EDVNTLWKAL ESFTCVEKLE DQLTCDNCKE KVTKEKQLRF DKLPPVATFH LKRFTNDGVT MEKIFDHIEF PLELDLSPFM SSNHDPEVST
201: RYHLYAFVEH IGIRATFGHY SSYVRSAPET WHNFDDSKVT RISEERVLSR PAYILFYARE GTPWFSSTFE QLKTVFEATP LHFSPVSVLD NSYESVDNSS
301: KACNDSVGVS IPDVKWPDSC CQEPKEEVFH SAESSNNEDS SAMIDALGSP QSEKPFAETS QQTEPESCPT ENKAYIDKSE KPFAETSQPK EPKPFADRAS
401: IDAPLLKVQN QDISPKRKAG ERATLGGPKL KYQKPNSHQK RQGTFQIQRA HLQTKKQEES RKTKRPLFRS NVAASAPDPK YKNHALSYLN RAQTPRARKL
501: ANALSDSPTK KKKSSNMRRS IKL

Arabidopsis Description

UBP21Ubiquitin carboxyl-terminal hydrolase 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIQ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.