Factsheet for GSMUA_Achr5P13990_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
plasma membrane 4
extracellular 3
endoplasmic reticulum 4
vacuole 3
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	40.44	67.33
PGSC0003DMT400093121	Potato	cytosol	17.75	35.99
Solyc08g048410.1.1	Tomato	cytosol	10.24	35.93
Zm00001d051513_P001	Maize	nucleus	36.01	35.7
Solyc09g015600.1.1	Tomato	extracellular	18.77	35.26
Solyc09g015580.1.1	Tomato	vacuole	18.43	34.73
Solyc09g015610.1.1	Tomato	cytosol	7.17	33.33
Solyc09g017980.1.1	Tomato	extracellular	11.77	33.33
Solyc08g048310.1.1	Tomato	extracellular, vacuole	11.95	32.41
VIT_02s0012g01340.t01	Wine grape	nucleus	28.67	32.0
TraesCS6D01G250100.1	Wheat	nucleus	39.25	31.12
TraesCS6B01G291800.1	Wheat	nucleus	39.08	30.99
TraesCS6A01G264800.1	Wheat	nucleus	38.74	30.93
HORVU6Hr1G067180.4	Barley	nucleus	38.74	30.72
Solyc10g047480.1.1	Tomato	nucleus	24.74	30.21
OQU85579	Sorghum	nucleus	37.2	29.26
Solyc08g005080.1.1	Tomato	cytosol	24.06	29.07
Zm00001d017686_P002	Maize	mitochondrion, nucleus	36.52	28.92
Solyc08g023360.1.1	Tomato	extracellular	12.46	28.74
PGSC0003DMT400093591	Potato	cytosol	12.29	28.69
Solyc08g021830.1.1	Tomato	cytosol	17.06	28.57
Solyc09g017990.1.1	Tomato	plastid	22.7	27.88
PGSC0003DMT400046008	Potato	cytosol	25.09	27.68
Solyc08g076910.2.1	Tomato	nucleus	33.62	27.59
PGSC0003DMT400045160	Potato	nucleus	33.45	27.53
Solyc08g021790.1.1	Tomato	extracellular, vacuole	10.92	27.35
Solyc02g005600.1.1	Tomato	vacuole	22.35	26.84
CDX87681	Canola	nucleus	28.33	26.35
PGSC0003DMT400089939	Potato	cytosol	16.72	26.2
GSMUA_Achr7P05330_001	Banana	cytosol	13.99	25.71
KRH74417	Soybean	nucleus	31.57	25.59
GSMUA_Achr7P19160_001	Banana	mitochondrion	13.31	25.57
GSMUA_Achr10P...	Banana	cytosol	15.02	25.51
KRH39541	Soybean	nucleus	31.91	25.3
GSMUA_Achr1P11380_001	Banana	cytosol	16.04	25.2
Bra022060.1-P	Field mustard	nucleus	28.33	24.96
CDY37145	Canola	cytosol	28.33	24.92
Bra021031.1-P	Field mustard	nucleus	27.13	24.77
CDX76553	Canola	cytosol	27.13	24.77
GSMUA_Achr7P05090_001	Banana	vacuole	19.45	24.41
GSMUA_Achr3P04660_001	Banana	nucleus	24.74	24.17
Bra025000.1-P	Field mustard	endoplasmic reticulum	29.52	23.73
GSMUA_Achr8P14390_001	Banana	cytosol	14.68	23.5
CDY58499	Canola	endoplasmic reticulum	28.84	23.44
AT4G17895.1	Thale cress	nucleus	27.13	22.88
CDX77686	Canola	endoplasmic reticulum	29.35	22.78
GSMUA_Achr10P...	Banana	nucleus	14.16	22.19
AT5G46740.1	Thale cress	nucleus, plastid	27.47	21.99
GSMUA_Achr8P09770_001	Banana	cytosol	16.04	21.96
GSMUA_Achr9P10330_001	Banana	mitochondrion	19.62	18.46
GSMUA_Achr7P17050_001	Banana	plastid	16.21	18.2
PGSC0003DMT400088084	Potato	cytosol	10.41	18.15
GSMUA_Achr7P19170_001	Banana	cytosol	4.1	17.91
GSMUA_Achr10P...	Banana	nucleus	11.95	17.24
GSMUA_Achr7P19010_001	Banana	nucleus	13.48	17.17
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	23.72	16.37
GSMUA_Achr4P01920_001	Banana	nucleus	25.94	15.73
GSMUA_Achr3P03560_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	20.31	14.2
GSMUA_Achr5P22990_001	Banana	vacuole	20.99	13.68
GSMUA_Achr2P20080_001	Banana	plasma membrane	20.99	13.07
GSMUA_Achr3P17560_001	Banana	endoplasmic reticulum, golgi	19.8	12.53
GSMUA_Achr10P...	Banana	golgi	9.39	12.22
GSMUA_AchrUn_...	Banana	golgi, vacuole	20.31	11.75
GSMUA_Achr1P10260_001	Banana	endoplasmic reticulum, plasma membrane	19.8	10.26
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	6.14	9.33

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	EnsemblPlantsGene:GSMUA_Achr5G13990_001	EnsemblPlants:GSMUA_Achr5P13990_001	EnsemblPlants:GSMUA_Achr5T13990_001	InterPro:IPR028889
UniProt:M0SYC8	PFAM:PF00443	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0002969546	InterPro:USP_CS	InterPro:USP_dom
SEG:seg	:	:	:	:	:

Description

Putative Ubiquitin carboxyl-terminal hydrolase [Source:GMGC_GENE;Acc:GSMUA_Achr5G13990_001]

Coordinates

chr5:+:10063997..10066998

Molecular Weight (calculated)

64925.4 Da

IEP (calculated)

6.768

GRAVY (calculated)

-0.409

Length

586 amino acids

Sequence
(BLAST)

001: MIHSNFLVQM CIANISTFQT QLIAPSRGKD SSPVIHLAID SWIKCFLLDV VLTRICWSSL IGEQGAALVN LGNTCFLNAV LQCLTHTVPL VQMIRKTDHS
101: ASHHGDDAGF CSFCALKAHI NGCLFLSRLV VSPTYLAQNL SKISPHFRLG QQEDAHEFLH SFLDNMHARC LGRTADDRPA SLEEDSIVKQ VFGGRLRSQL
201: RCCSCGHCSD TFEPLLDLSL EIDNVRSVGD ALESFTKLER IDDPEVRFTC DGCKAQVSME KQLKLDQAPQ VLALHLKRFK NDGSYSNKID DFVEYPLELD
301: LNPCLSCPAK EVQSKYDLYA VLVHVGSALS GHYFCYIRSS PSTWHQIDDS QARVSESDAL EQQAYVFFYV RRGSSCWFSN FMEEEKALDV QAATGTSPAS
401: VLEHAERYSA SSSGSANACS SSRGTPERNE DAGPCNNASP LSPVPDGSRV AKRQACHART PPRTFNQWHG YESDDEPPED DEDDDLLPLY EMEFKATKGA
501: RKPAAAGSMN AQFNRLVRSM PKSRRKRFVD CINSQQNCST KRPHNSRQSG GRNSNGLGHR SPTAVEPSTP ADCPSLSPRS IKRGLF

Best Arabidopsis Sequence Match ( AT4G17895.1 )
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Arabidopsis Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.