Factsheet for Bra021031.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76553	Canola	cytosol	99.69	99.69
AT4G17895.1	Thale cress	nucleus	57.32	52.95
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	22.59	41.19
Bra022060.1-P	Field mustard	nucleus	42.52	41.05
Solyc09g015600.1.1	Tomato	extracellular	19.31	39.74
PGSC0003DMT400093121	Potato	cytosol	17.29	38.41
Solyc09g015580.1.1	Tomato	vacuole	18.54	38.26
Bra025000.1-P	Field mustard	endoplasmic reticulum	42.68	37.59
Solyc08g048310.1.1	Tomato	extracellular, vacuole	11.68	34.72
Solyc08g005080.1.1	Tomato	cytosol	25.86	34.23
Solyc08g021830.1.1	Tomato	cytosol	18.54	34.0
Solyc08g048410.1.1	Tomato	cytosol	8.72	33.53
Solyc09g017980.1.1	Tomato	extracellular	10.75	33.33
Solyc08g021790.1.1	Tomato	extracellular, vacuole	12.15	33.33
VIT_02s0012g01340.t01	Wine grape	nucleus	27.26	33.33
PGSC0003DMT400046008	Potato	cytosol	27.41	33.15
Solyc09g015610.1.1	Tomato	cytosol	6.23	31.75
Solyc09g017990.1.1	Tomato	plastid	23.05	31.03
Solyc10g047480.1.1	Tomato	nucleus	23.05	30.83
Solyc08g023360.1.1	Tomato	extracellular	11.99	30.32
Solyc02g005600.1.1	Tomato	vacuole	22.59	29.71
PGSC0003DMT400045160	Potato	nucleus	32.09	28.93
Solyc08g076910.2.1	Tomato	nucleus	31.78	28.57
KRH74417	Soybean	nucleus	31.78	28.22
KRH39541	Soybean	nucleus	32.24	28.01
PGSC0003DMT400089939	Potato	cytosol	16.2	27.81
Bra038533.1-P	Field mustard	nucleus	15.26	27.61
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	24.77	27.13
PGSC0003DMT400093591	Potato	cytosol	10.59	27.09
Bra010647.1-P	Field mustard	nucleus	15.26	26.34
Zm00001d051513_P001	Maize	nucleus	24.14	26.23
PGSC0003DMT400088084	Potato	cytosol	12.15	23.21
Zm00001d017686_P002	Maize	mitochondrion, nucleus	25.7	22.3
Bra011823.1-P	Field mustard	nucleus	15.26	22.22
TraesCS6A01G264800.1	Wheat	nucleus	25.08	21.93
TraesCS6D01G250100.1	Wheat	nucleus	24.92	21.65
OQU85579	Sorghum	nucleus	25.08	21.61
TraesCS6B01G291800.1	Wheat	nucleus	24.77	21.52
HORVU6Hr1G067180.4	Barley	nucleus	24.61	21.38
Bra024037.1-P	Field mustard	cytosol	13.08	21.0
Bra011290.1-P	Field mustard	vacuole	19.0	19.93
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	17.76	18.07
Bra007837.1-P	Field mustard	nucleus	14.02	17.65
Bra028566.1-P	Field mustard	cytosol	13.55	17.26
Bra006790.1-P	Field mustard	nucleus, plastid	22.12	17.09
Bra020400.1-P	Field mustard	nucleus	22.12	17.05
Bra027341.1-P	Field mustard	mitochondrion	16.98	15.87
Bra010268.1-P	Field mustard	cytosol	13.55	15.29
Bra002683.1-P	Field mustard	nucleus	23.21	15.17
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	13.55	14.75
Bra024386.1-P	Field mustard	golgi	17.29	14.47
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	18.22	13.12
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	17.76	13.0
Bra019219.1-P	Field mustard	golgi	19.47	12.35
Bra013814.1-P	Field mustard	golgi	18.54	11.67

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	EnsemblPlantsGene:Bra021031	EnsemblPlants:Bra021031.1	EnsemblPlants:Bra021031.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889
UniProt:M4DWY5	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033
PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI00025470AC	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

AT4G17895 (E=7e-151) UBP20 | UBP20 (UBIQUITIN-SPECIFIC PROTEASE 20); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA08:+:10375979..10378529

Molecular Weight (calculated)

72594.4 Da

IEP (calculated)

4.489

GRAVY (calculated)

-0.595

Length

642 amino acids

Sequence
(BLAST)

001: MLVANSEFSS SILPRSPLIP NPVETIDESI GNNQVSFSTE EVSVPPRNSD EPLSTPLDET LIAPSPLRLE HGECSDAQVM NKPINHSKRN DTHLDICLSK
101: SPDNRQQWSP NVSPGSDTDV DSGNQPLWRF RQKPPEIVES PCVGAGLLNL GNSCFINSVL QCFTHTVPLI ESLYAYQYED PCNCNQRFCV IRALRYHIGV
201: ALETTSVFSI SPVYFFNNLR CFSPDFRRYQ QEDAHEFLHA FLNKLEICCL NRRNDVNFVQ HIFGGRLVSE LRCCNCNYVS ETFEDSLGLS LEIEDVDNLQ
301: SALDSFTRVE KLEEQMKCDN CDEKVSKEKR LLLQNLPQVI TFHLKRFKNN GYFMLKNCNY VEFPLELDLQ PYMSNDQVAA KYYLYALVKH YGSLAYGHYS
401: SFVRSAPSIW HKFNDKQVTR VDEDCVLSQN SYILFYAREG TPWFSTAIEE LHPMTEEDTS SEYPSPKSVS DPSNEECSSE ISSENVSKKG CGSAGVSDLL
501: HVETEESCGT HSDEPKEDNE LSQSEESSDE ESSMEVLLDQ HDPDDDSNNS CTEKEADSCF ATERATTGVA FSPYLIGSSP KKPEGNFQIQ LERVEAKKNY
601: EEEEPYKQPL LISLMKKPPP RDRELGEAMS TSGSAQKKLK TS

Best Arabidopsis Sequence Match ( AT4G17895.1 )
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Arabidopsis Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.