Factsheet for Bra002683.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55010	Canola	nucleus	84.73	97.88
CDY57464	Canola	nucleus	81.16	93.99
Bra006790.1-P	Field mustard	nucleus, plastid	63.75	75.33
Bra020400.1-P	Field mustard	nucleus	62.63	73.83
AT5G57990.1	Thale cress	nucleus	60.9	69.62
KRH72298	Soybean	cytosol, plastid	27.29	52.76
GSMUA_Achr3P04660_001	Banana	nucleus	27.29	44.67
VIT_19s0014g00210.t01	Wine grape	nucleus	36.05	39.6
Solyc07g005530.2.1	Tomato	nucleus	36.76	39.11
PGSC0003DMT400028924	Potato	nucleus	36.46	38.66
KRH03060	Soybean	nucleus	34.93	37.98
VIT_00s0174g00260.t01	Wine grape	nucleus	38.39	37.81
Os06t0184300-01	Rice	mitochondrion	34.62	36.8
HORVU7Hr1G030300.1	Barley	nucleus	33.81	35.7
TraesCS7A01G147900.1	Wheat	nucleus	33.4	35.61
TraesCS7B01G051400.2	Wheat	nucleus	33.71	35.25
EER89337	Sorghum	nucleus	32.79	35.11
TraesCS7D01G149800.1	Wheat	nucleus	33.5	35.11
Zm00001d045104_P005	Maize	nucleus	31.57	34.33
GSMUA_Achr4P01920_001	Banana	nucleus	33.5	34.06
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	27.29	31.57
TraesCS6D01G339500.1	Wheat	nucleus	31.77	30.2
TraesCS6A01G357500.1	Wheat	mitochondrion, nucleus	31.67	29.04
TraesCS6B01G389500.1	Wheat	nucleus	31.57	29.0
Bra038533.1-P	Field mustard	nucleus	10.08	27.89
Os02t0795000-01	Rice	nucleus	33.6	27.85
Bra010647.1-P	Field mustard	nucleus	9.67	25.54
Bra007837.1-P	Field mustard	nucleus	12.12	23.33
Bra024037.1-P	Field mustard	cytosol	9.47	23.25
Bra021031.1-P	Field mustard	nucleus	15.17	23.21
Bra022060.1-P	Field mustard	nucleus	15.27	22.56
Bra011290.1-P	Field mustard	vacuole	13.95	22.39
Bra027341.1-P	Field mustard	mitochondrion	15.58	22.27
Bra011823.1-P	Field mustard	nucleus	9.88	22.0
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	14.05	21.87
Bra028566.1-P	Field mustard	cytosol	10.69	20.83
Bra025000.1-P	Field mustard	endoplasmic reticulum	15.38	20.71
Bra010268.1-P	Field mustard	cytosol	10.08	17.4
Bra024386.1-P	Field mustard	golgi	13.54	17.34
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	9.98	16.61
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	14.26	15.7
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	13.75	15.39
Bra019219.1-P	Field mustard	golgi	14.66	14.23
Bra013814.1-P	Field mustard	golgi	14.05	13.53

Protein Annotations

MapMan:19.2.3.1.1.9	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra002683	EnsemblPlants:Bra002683.1	EnsemblPlants:Bra002683.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
InterPro:IPR028889	UniProt:M4CEQ2	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235
PANTHER:PTHR44033	PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0002545171
InterPro:USP_CS	InterPro:USP_dom	SEG:seg	:	:	:

Description

AT5G57990 (E=3e-205) UBP23 | UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA10:-:8256203..8260076

Molecular Weight (calculated)

107802.0 Da

IEP (calculated)

9.242

GRAVY (calculated)

-0.607

Length

982 amino acids

Sequence
(BLAST)

001: MEIQTDQDGS CAAVSSSSAS AVFRKIEFHL ARKPFNGFSS RGSDFKMETL NPSSSSNNRA FSLSSVKKVD GPDSLDRELT FTKTIRKIGA GLENLGNTCY
101: LNSVLQCLTY TEPLAAYLQD VAHEQRCRVA GFCALCAMQR HVRIALQSTG RSLAPKYLVS NLRCVSQNFR KCRQEDAHEY MINLLECMHK CCLASGVPSE
201: SSDAYRSSLV HKIFGGSLRS QVKCAQCSHC SDKFDPFLDL SLDISRADSL QRALLRFTAV ELLDNGSKVY QCERCKQKVK AVKQLTVFKA PSVLTVHLKR
301: FEAYRSEKID KKVEFPPAID MKPFVSGPYE GNLKYTLYGV LVHCGGSIHS GHYYCFVRTS SGMWYSLDDN EVIQASEKTV FNQKAYMLFY VRDRQNTAPK
401: NPVTVAKKET SKESVAVNRT SLIVSSNRND QVNGSTVIKA CSLNATVANG TTPLRACDKG SPACLTTPKD VNAKDPPSSV EGKEILEGQN GTAPVKSNDQ
501: GAPAVLIQKD KENPKDPLSS VEAKEILKME NSTAPPSESR DQGAPAVLTQ NELSVVAANV TSPLRSCEQG APAVLTPKDL NAKETQTNPP SSVERKENLE
601: RPCDVGAPVV LTQKDLINNN KTLQKEESLP QANGEGSLVK EDSKAACTMM PGKASPLLDD STNTQILVNL PTSLGKAENS VDEKKSANNL NESDTSLKVK
701: NDNSPMEEAV LDNQTLVHQS DESATESIKQ TSVEETFTTP RKTRKRNMKT VQVGLSSFKL ALGVRKKRGR SRTLAVKGTS ESKKRATDLE RSTPLITSKA
801: ASSGSAYKHG KGKSVSVDNE RIMTSNGNML LASPIVELKE RTNQNGAVLA SDQQQPLKSS DLSEASQNAK RKRDNSKEEQ ILSQKEQVTI LTRGLPETVV
901: AKWDEEVSAS KKMGSSEGTR IGYVADEWDE EYDRGKKKKI RIKEEMYVGP NPFQAFASKK QQTDTKKKWS QGRNTAKTGF RI

Best Arabidopsis Sequence Match ( AT5G57990.1 )
(BLAST)

001: MEVATSSTEI TIQTDRDPSS NNNGSCAVAS STASAVFRKI EFHPARKPFN GFSNGRSDFK IETLNPCSSN QRLLSAPSAK KPDSSDLLEH GFEPDLTFSI
101: TFRKIGAGLQ NLGNTCFLNS VLQCLTYTEP LAATLQTAAH QKYCHVAGFC ALCAIQKHVR TARQANGRIL APKDLVSNLR CISRNFRNCR QEDAHEYMIN
201: LLECMHKCSL PSGVPSESSD AYRRSLVHKI FGGSLRSQVK CEQCSHCSNK FDPFLDLSLD ISKADSLQRA LSRFTAVELL DNGAKVYQCE RCKQKVKAKK
301: QLTVSKAPYV LTVHLKRFEA HRSEKIDRKV DFTSAIDMKP FVSGPHEGNL KYTLYGVLVH YGRSSHSGHY ACFVRTSSGM WYSLDDNRVV QVSEKTVFNQ
401: KAYMLFYVRD RQNAVPKNSV PVVKKESFAT NRASLIVASN IKDQVNGSTV IKECGFGALV ANGLAPLKSC GPSTPAVLTQ KDLNAKETQN NAISNVEAKE
501: ILETENGSAP VKTCDLAAPT VLVQKDLNTK EIFQKEVPLP QANGEGSLVK EDSKAACLIL PEKVSPHLDG SANAQTLVKL PTLGPKAENS VEEKNSLNNL
601: NEPANSLKVI NVSVGNPPVE KAVLIDQTMG HHLEESATSI ESLKLTSERE TLTTPKKTRK PKTKTLKVEF KFFKLALGLR KKKVQRRERL STTVAGEIIS
701: EELLSKKRVK YQDTSLIAPS KMISSSDGAV TSDQQQPVGS SDLSEASQNA KRKRESVLLQ KEAVNILTRG VPETVVAKWD EEISASQKRG SKSEGASSIG
801: YVADEWDEEY DRGKKKKIRI KEESYRGPNP FQMLASKRQK ETKKKWTQSI TDAKTAYRI

Arabidopsis Description

UBP23Ubiquitin carboxyl-terminal hydrolase 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.