Factsheet for Bra038533.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13770	Canola	nucleus	98.59	98.31
AT2G22310.1	Thale cress	nucleus	90.14	87.67
GSMUA_Achr10P...	Banana	cytosol	84.79	87.25
KRH59329	Soybean	nucleus	90.14	86.72
KRH43175	Soybean	nucleus	89.86	86.45
VIT_07s0141g00230.t01	Wine grape	nucleus	89.01	85.64
Bra010647.1-P	Field mustard	nucleus	89.58	85.48
KRH31299	Soybean	nucleus	88.17	84.82
KRG97572	Soybean	nucleus	88.17	84.82
PGSC0003DMT400032703	Potato	nucleus	84.23	81.69
GSMUA_Achr7P19160_001	Banana	mitochondrion	69.58	80.98
Zm00001d028005_P001	Maize	nucleus	83.1	80.6
GSMUA_Achr8P14390_001	Banana	cytosol	83.1	80.6
Os03t0190800-01	Rice	cytosol	82.25	79.78
EER92723	Sorghum	nucleus	82.25	79.78
TraesCS4B01G306100.1	Wheat	cytosol	81.69	79.23
TraesCS4D01G304300.1	Wheat	cytosol	81.69	79.23
HORVU4Hr1G078590.1	Barley	cytosol	81.69	79.23
TraesCS4A01G406600.1	Wheat	cytosol	81.41	78.96
TraesCS7D01G125700.1	Wheat	nucleus	81.13	78.69
GSMUA_Achr10P...	Banana	nucleus	81.13	77.01
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	77.18	76.54
Bra011823.1-P	Field mustard	nucleus	88.73	71.43
Bra024037.1-P	Field mustard	cytosol	25.07	22.25
Bra028566.1-P	Field mustard	cytosol	23.94	16.87
Bra010268.1-P	Field mustard	cytosol	26.48	16.52
Bra011290.1-P	Field mustard	vacuole	27.61	16.01
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	26.2	15.76
Bra021031.1-P	Field mustard	nucleus	27.61	15.26
Bra007837.1-P	Field mustard	nucleus	21.69	15.1
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	26.2	14.74
Bra022060.1-P	Field mustard	nucleus	27.32	14.59
Bra025000.1-P	Field mustard	endoplasmic reticulum	28.45	13.85
Bra027341.1-P	Field mustard	mitochondrion	26.48	13.68
Bra024386.1-P	Field mustard	golgi	27.61	12.78
Bra006790.1-P	Field mustard	nucleus, plastid	27.61	11.79
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	27.61	11.17
Bra020400.1-P	Field mustard	nucleus	26.2	11.16
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	27.32	10.87
Bra002683.1-P	Field mustard	nucleus	27.89	10.08
Bra019219.1-P	Field mustard	golgi	27.04	9.49
Bra013814.1-P	Field mustard	golgi	26.48	9.22

Protein Annotations

MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra038533	EnsemblPlants:Bra038533.1	EnsemblPlants:Bra038533.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889
UniProt:M4FBR7	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR43942
PANTHER:PTHR43942:SF5	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0002541F59	InterPro:USP_CS
InterPro:USP_dom	:	:	:	:	:

Description

AT2G22310 (E=3e-185) ATUBP4, UBP4 | ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific protease

Coordinates

chrA09:+:5146474..5148127

Molecular Weight (calculated)

41219.9 Da

IEP (calculated)

6.320

GRAVY (calculated)

-0.449

Length

355 amino acids

Sequence
(BLAST)

001: MGVAGSKLEK ALGEQFPEGE RYFGFENFGN TCYCNSVLQA LYFCAPFREQ LLEYYSTNNK NVENLLTCLA DLFYQISSQK KKTGVIAPKR FVQRLKKQNV
101: LFRSYMHQDA HEFLNYLLNE LDDILEKEAK TDNETSSNGP KLLQENGVHK EPTVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD IEQNSSITSC
201: LNNFCSTETL HSEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYI EQLGRYKKLS YRVVFPLELK LDNTVEEYAD IEYSLFAVVV HVGTGPNHGH
301: YVSLVKSHNH WLFFDDENVE MIEESAVQTF FGSSQEYSSN TDHGYILFYE RLGTR

Best Arabidopsis Sequence Match ( AT2G22310.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCAPFREQ LLEHYANNKA DAEENLLTCL ADLFSQISSQ KKKTGVIAPK RFVQRLKKQN
101: ELFRSYMHQD AHEFLNYLLN ELVEILEKET QATKADNETS SSPEKIANVL KAPLANGVHK EPIVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD
201: IEQNSSITSC LKNFSSTETL HAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTVDEYVD IEYSLFAVVV
301: HVGSGPNHGH YVSLVKSHNH WLFFDDESVE IIEESAVQTF FGSSQEYSSN TDHGYILLYE SLGTR

Arabidopsis Description

UBP4UBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178W1M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.