Factsheet for Solyc02g005600.1.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400088084	Potato	cytosol	49.18	71.43
Solyc09g017990.1.1	Tomato	plastid	66.8	68.34
Solyc09g015580.1.1	Tomato	vacuole	42.62	66.88
Solyc09g015600.1.1	Tomato	extracellular	41.39	64.74
Solyc08g048410.1.1	Tomato	cytosol	20.9	61.08
Solyc09g017980.1.1	Tomato	extracellular	23.77	56.04
Solyc08g048310.1.1	Tomato	extracellular, vacuole	24.59	55.56
Solyc09g015610.1.1	Tomato	cytosol	14.34	55.56
Solyc08g021830.1.1	Tomato	cytosol	39.75	55.43
Solyc08g005080.1.1	Tomato	cytosol	54.92	55.26
Solyc10g047480.1.1	Tomato	nucleus	49.8	50.62
Solyc08g021790.1.1	Tomato	extracellular, vacuole	23.98	50.0
Solyc08g023360.1.1	Tomato	extracellular	25.41	48.82
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	23.98	33.24
Solyc08g076910.2.1	Tomato	nucleus	40.16	27.45
VIT_02s0012g01340.t01	Wine grape	nucleus	27.66	25.71
KRH39541	Soybean	nucleus	35.45	23.41
Solyc07g007640.1.1	Tomato	cytosol	11.27	23.21
Bra021031.1-P	Field mustard	nucleus	29.71	22.59
CDX76553	Canola	cytosol	29.71	22.59
CDX87681	Canola	nucleus	28.89	22.38
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	26.84	22.35
KRH74417	Soybean	nucleus	32.38	21.85
Solyc01g105240.2.1	Tomato	nucleus	16.19	21.58
CDY37145	Canola	cytosol	29.1	21.32
AT4G17895.1	Thale cress	nucleus	30.12	21.15
CDY58499	Canola	endoplasmic reticulum	31.15	21.08
Bra025000.1-P	Field mustard	endoplasmic reticulum	31.35	20.99
Zm00001d051513_P001	Maize	nucleus	25.41	20.98
Bra022060.1-P	Field mustard	nucleus	28.48	20.9
Solyc04g056290.2.1	Tomato	nucleus	15.57	20.6
CDX77686	Canola	endoplasmic reticulum	31.35	20.26
AT5G46740.1	Thale cress	nucleus, plastid	28.89	19.26
TraesCS6D01G250100.1	Wheat	nucleus	27.05	17.86
HORVU6Hr1G067180.4	Barley	nucleus	27.05	17.86
OQU85579	Sorghum	nucleus	27.25	17.85
TraesCS6A01G264800.1	Wheat	nucleus	26.84	17.85
TraesCS6B01G291800.1	Wheat	nucleus	26.43	17.46
Zm00001d017686_P002	Maize	mitochondrion, nucleus	26.02	17.16
Solyc08g068810.2.1	Tomato	cytosol	17.01	15.12
Solyc01g068240.2.1	Tomato	cytosol	16.19	14.82
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	19.67	13.99
Solyc11g065210.1.1	Tomato	cytosol	14.96	13.67
Solyc12g096430.1.1	Tomato	nucleus, plastid	17.42	13.67
Solyc07g005530.2.1	Tomato	nucleus	22.34	11.81
Solyc08g069050.2.1	Tomato	extracellular	17.62	11.07
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	19.26	9.73
Solyc04g076210.2.1	Tomato	nucleus	20.29	9.01

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:K4B4G0	PFAM:PF00443
ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PFscan:PS51257	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	EnsemblPlantsGene:Solyc02g005600.1	EnsemblPlants:Solyc02g005600.1.1	UniParc:UPI0002767EA7
InterPro:USP_CS	InterPro:USP_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:9741119..9744391

Molecular Weight (calculated)

55870.3 Da

IEP (calculated)

4.875

GRAVY (calculated)

-0.268

Length

488 amino acids

Sequence
(BLAST)

001: MLSHFFKIFK KIVLSFLSFF GCFLEIAMGK IIVENLTSPS HPTLKYNEIE KKNINLSSVK IEVEEEEQKE MDLSFYDGSP DWIRSTPTMI TGADSDSIDY
101: KISSDSSGYS YSDGDEWSPL KGEPSSLIGP ICSTDPDNFK KIVQKETKPI EYKNFKIKGI GMCNLGNTCF VNAVVQSFIH NVVFLQLLRS IDHASPCQNF
201: SCYFNFNQQQ DAHEFLQCFL NQLETCCYYL ETKDNVVKEA FGGRFMSKLR CCNCGHSSIT REPLIDISLE IEGIDSVPAA FESFTKIEKI EFYCKRCKTY
301: GPFEKQLLVD QAPTVAALHL KRFKNNGLVS QKVENHVSFP LELDILLYTN NINNIKYDLY AVIVHSGPSI SSGHYYIFIR CAPNEWYKFN DEKVDYVQED
401: LVLAENAYIL LYTKKGTLWF ADYVEIHRPF VDLIMATTSN DFSYETSLKP ALNEIEDNGS HVQVYGEDQF QNVETKKDNE LMDALKCN

Best Arabidopsis Sequence Match ( AT4G17895.1 )
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Arabidopsis Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.