Factsheet for Solyc04g076210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	28.94	42.97
VIT_00s0199g00030.t01	Wine grape	vacuole	34.03	41.42
AT5G65450.2	Thale cress	endoplasmic reticulum, golgi, mitochondrion, nucleus	28.12	41.2
GSMUA_Achr10P...	Banana	golgi	16.56	40.44
GSMUA_Achr10P...	Banana	nucleus	14.83	40.15
GSMUA_Achr7P19010_001	Banana	nucleus	16.65	39.78
GSMUA_Achr5P22990_001	Banana	vacuole	32.21	39.38
CDY08792	Canola	vacuole	26.66	39.12
KRH74502	Soybean	golgi, plasma membrane, vacuole	32.85	38.94
KRH69660	Soybean	golgi	33.03	38.7
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	25.93	38.67
Zm00001d050489_P001	Maize	nucleus	15.92	38.29
Bra024386.1-P	Field mustard	golgi	26.48	37.94
CDY14564	Canola	golgi	26.3	37.93
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	12.83	36.53
OQU80649	Sorghum	nucleus	26.3	35.86
GSMUA_AchrUn_...	Banana	golgi, vacuole	31.85	34.55
Os08t0478500-01	Rice	plastid	30.12	33.84
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	28.12	33.3
TraesCS5B01G243400.1	Wheat	vacuole	27.66	33.19
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	27.21	33.04
TraesCS7A01G282200.4	Wheat	plastid	28.75	31.95
TraesCS7B01G179000.2	Wheat	plastid	28.66	31.72
TraesCS7D01G280800.4	Wheat	plastid	28.48	31.55
TraesCS5A01G246000.3	Wheat	vacuole	27.48	31.39
Zm00001d020769_P005	Maize	nucleus	24.2	31.07
Solyc12g096430.1.1	Tomato	nucleus, plastid	17.47	30.87
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	27.57	30.51
OQU89635	Sorghum	vacuole	25.11	30.26
Solyc08g069050.2.1	Tomato	extracellular	20.38	28.83
Solyc08g048410.1.1	Tomato	cytosol	4.37	28.74
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	24.48	27.85
Solyc04g056290.2.1	Tomato	nucleus	8.83	26.29
Solyc01g105240.2.1	Tomato	nucleus	8.55	25.68
Solyc09g015580.1.1	Tomato	vacuole	6.64	23.47
Solyc09g015600.1.1	Tomato	extracellular	6.64	23.4
Solyc09g015610.1.1	Tomato	cytosol	2.64	23.02
Solyc07g007640.1.1	Tomato	cytosol	4.91	22.78
Solyc08g048310.1.1	Tomato	extracellular, vacuole	4.46	22.69
Solyc08g005080.1.1	Tomato	cytosol	9.83	22.27
Solyc09g017990.1.1	Tomato	plastid	9.46	21.8
Solyc09g017980.1.1	Tomato	extracellular	4.09	21.74
Solyc08g023360.1.1	Tomato	extracellular	5.0	21.65
Solyc10g047480.1.1	Tomato	nucleus	9.37	21.46
Solyc08g068810.2.1	Tomato	cytosol	10.65	21.31
Solyc02g005600.1.1	Tomato	vacuole	9.01	20.29
Solyc08g021790.1.1	Tomato	extracellular, vacuole	4.28	20.09
Solyc08g021830.1.1	Tomato	cytosol	6.37	20.0
Solyc11g065210.1.1	Tomato	cytosol	9.46	19.48
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	12.1	19.39
Solyc01g068240.2.1	Tomato	cytosol	9.1	18.76
Solyc08g076910.2.1	Tomato	nucleus	11.28	17.37
Solyc07g005530.2.1	Tomato	nucleus	12.92	15.38

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006464	GO:GO:0006511	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008283	GO:GO:0009056	GO:GO:0009628	GO:GO:0009651	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
GO:GO:0046872	GO:GO:0048364	GO:GO:0048366	GO:GO:0048367	GO:GO:1901000	InterPro:IPR002893
InterPro:IPR028889	UniProt:K4BU59	PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360
PFscan:PS50235	PFscan:PS50865	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc04g076210.2	EnsemblPlants:Solyc04g076210.2.1	UniParc:UPI0002765A73	InterPro:USP_CS	InterPro:USP_dom
InterPro:Znf_MYND	SEG:seg	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase 16 [Source:Projected from Arabidopsis thaliana (AT4G24560) UniProtKB/Swiss-Prot;Acc:Q9SB51]

Coordinates

chr4:+:61143997..61152641

Molecular Weight (calculated)

119865.0 Da

IEP (calculated)

7.379

GRAVY (calculated)

-0.645

Length

1099 amino acids

Sequence
(BLAST)

0001: MLVGGDLGFL SSLVVAAFVE EDEVFVETPA SSASPPPPPT ISTSYSGSRQ LQYQCAVCSS PTSTRCSQCK AVRYCSGKCQ ILHWRQGHKD ECRPVSNLDH
0101: LNDAEAKSHL KAYKQEPDGS HLKSTEVEGR RSSESGIASP EEAALLRSKY FATSDGEHDT GGQSLTDSKC LNLNSSFVLH SSSCEHLDLS TSSGSSVDHS
0201: ASDSNDSDAS DSHRSAVDDT VKIQTNHSKV ERFKPSYTEQ PQLVQTADND STSGKYNHTK PSIHGDAQSK YWTSSSATDD SSESSLTAPS TPSSGFWEGP
0301: VPYTRSRIGS LDGIADPPSK DACDIKISDS QSTSCHPPEF AIPLLPKAGE QGSNSKKNLE NPTPIIVEVP KPVNRVESRI EIKDQKESSR SSASRSVTLD
0401: QLDVHGSRDK CTLTSEEGRY SSSRASANIK KHDGLKVSSL RSSSPNESYR GVEGSASALQ LPKERQKGSS PAKIADNISS NNVRHDIQNV KSPKIDGTQV
0501: ASACLAESSA PLPNAKNGLK SSVLKVVDQL RSSKLTRLNS LGDECDVNGR HGNKALFPYE SFVKLHNWKN ELRPFGLVNC GNSCYANAVL QCLAFTPPLT
0601: SYFLQGLHSK TCEKKGWCFT CEFESLVLKA KDGNSPLSPS SIISHLESIG SNLGNGREED AHEFLRYVID TMQSICLKGA GVTAPGSFEE ETSLIGLTFG
0701: GYLRSKIECM RCGGKSERQE RIMDLTVEID GDIGTLEEAL KQFTHTETLD GENKYRCVRC KSYERAKKKL KVVEAPNVLT VALKRFQSGK FGKLNKTIKF
0801: PEFLNLAPYM SGTSDKSPVY QLYGVVVHLD VMNAAFSGHY VCYVRNFQNK WYKVDDSSVK SVELERVLSK GAYMLLYSRC SPRAPRIMRS LKSRSHTRSP
0901: WDSSHGDSTS KTCKGCSYPS HTSVRPIRSI FEEDSSSEQS SFFSELGSCS TDSTNRDSTS TDDLNIDIFG DSGVCWNSLW RSSSDSDTSS SSSSPSPLYS
1001: RHSPLADLDR YASAREETSC SVNPETAGDG QGFWTGLRDR NSYTGVPETS GRTPPLCPNP TKHCRKVVSS HSSSNTDSSR LGRVNPCDKS KSPVTCRDR

Best Arabidopsis Sequence Match ( AT4G24560.1 )
(BLAST)

0001: MLLVLDLGIS SLVLVVSLVL PLIGLFVRHK WRVAAQRREE IRRLLIHASE EAARAELEAS VEFSSVAVSN VFHCPVCYCL ATTRCSRCKA VRYCSGKCQI
0101: IHWRQGHKDE CHPASIVYDS EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL IDKEEAVSVA ETSGSSFSGF
0201: SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR
0301: HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI
0401: SSSTDALSPL DSSNLSHVTL PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA VVQHINSLHG RSGLKASVLK
0501: VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE
0601: KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD
0701: ISTLDDALRR FTRTEILDGE NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG GSEKSHDYKL YGVIVHLDVM
0801: NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR
0901: SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH
1001: QLPLGGER

Arabidopsis Description

UBP16Ubiquitin carboxyl-terminal hydrolase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB51]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.