Factsheet for AT4G17895.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76553	Canola	cytosol	52.95	57.32
Bra021031.1-P	Field mustard	nucleus	52.95	57.32
AT5G46740.1	Thale cress	nucleus, plastid	46.76	44.4
Solyc09g015600.1.1	Tomato	extracellular	17.55	39.1
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	19.57	38.64
Solyc09g015580.1.1	Tomato	vacuole	16.83	37.62
PGSC0003DMT400093121	Potato	cytosol	15.25	36.68
Solyc08g048410.1.1	Tomato	cytosol	8.63	35.93
VIT_02s0012g01340.t01	Wine grape	nucleus	26.76	35.43
Solyc08g048310.1.1	Tomato	extracellular, vacuole	10.79	34.72
Solyc08g021790.1.1	Tomato	extracellular, vacuole	11.65	34.62
Solyc09g017980.1.1	Tomato	extracellular	10.22	34.3
Solyc09g015610.1.1	Tomato	cytosol	6.19	34.13
Solyc08g021830.1.1	Tomato	cytosol	17.12	34.0
PGSC0003DMT400046008	Potato	cytosol	25.61	33.52
Solyc08g005080.1.1	Tomato	cytosol	23.31	33.4
Solyc08g023360.1.1	Tomato	extracellular	12.09	33.07
Solyc09g017990.1.1	Tomato	plastid	22.45	32.7
Solyc10g047480.1.1	Tomato	nucleus	22.16	32.08
Solyc02g005600.1.1	Tomato	vacuole	21.15	30.12
PGSC0003DMT400089939	Potato	cytosol	15.97	29.68
PGSC0003DMT400045160	Potato	nucleus	30.36	29.63
Solyc08g076910.2.1	Tomato	nucleus	30.22	29.41
KRH39541	Soybean	nucleus	31.22	29.36
KRH74417	Soybean	nucleus	30.36	29.18
Zm00001d051513_P001	Maize	nucleus	24.03	28.26
PGSC0003DMT400093591	Potato	cytosol	9.93	27.49
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	22.88	27.13
PGSC0003DMT400088084	Potato	cytosol	12.81	26.49
AT2G22310.1	Thale cress	nucleus	13.81	26.3
AT4G39910.1	Thale cress	nucleus	13.81	25.88
OQU85579	Sorghum	nucleus	25.61	23.89
TraesCS6A01G264800.1	Wheat	nucleus	25.04	23.71
HORVU6Hr1G067180.4	Barley	nucleus	25.18	23.68
TraesCS6D01G250100.1	Wheat	nucleus	25.04	23.55
TraesCS6B01G291800.1	Wheat	nucleus	25.04	23.55
Zm00001d017686_P002	Maize	mitochondrion, nucleus	24.75	23.24
AT4G31670.1	Thale cress	endoplasmic reticulum, golgi	16.55	18.23
AT3G14400.1	Thale cress	mitochondrion	16.12	16.94
AT2G24640.1	Thale cress	endoplasmic reticulum, vacuole	16.26	16.82
AT5G10790.1	Thale cress	cytosol	13.09	16.34
AT4G30890.2	Thale cress	cytosol	12.66	15.97
AT5G57990.1	Thale cress	nucleus	19.57	15.83
AT5G65450.2	Thale cress	endoplasmic reticulum, golgi, mitochondrion, nucleus	15.11	14.0
AT1G17110.2	Thale cress	endoplasmic reticulum, plasma membrane	16.12	12.07
AT4G24560.1	Thale cress	extracellular, golgi	17.27	11.9

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	EntrezGene:827513	ProteinID:AEE83963.1	EMBL:AF302668	ArrayExpress:AT4G17895
EnsemblPlantsGene:AT4G17895	RefSeq:AT4G17895	TAIR:AT4G17895	RefSeq:AT4G17895-TAIR-G	EnsemblPlants:AT4G17895.1	TAIR:AT4G17895.1
Unigene:At.21461	MEROPS:C19.A16	ProteinID:CAA17132.1	ProteinID:CAB78791.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	InterPro:IPR028889	RefSeq:NP_567544.1	PFAM:PF00443	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	ScanProsite:PS00972	ScanProsite:PS00973
PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	UniProt:Q9FPS7
SUPFAM:SSF54001	Symbol:UBP20	UniParc:UPI000009D351	InterPro:USP_CS	InterPro:USP_dom	SEG:seg

Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]

Coordinates

chr4:+:9939666..9942988

Molecular Weight (calculated)

78636.8 Da

IEP (calculated)

4.208

GRAVY (calculated)

-0.614

Length

695 amino acids

Sequence
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.