Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72275 | Canola | cytosol | 56.99 | 84.86 |
| CDY23262 | Canola | nucleus | 78.4 | 78.98 |
| Bra024037.1-P | Field mustard | cytosol | 56.44 | 77.75 |
| Bra010268.1-P | Field mustard | cytosol | 79.49 | 76.98 |
| CDY28224 | Canola | endoplasmic reticulum, vacuole | 79.49 | 74.24 |
| Bra011230.1-P | Field mustard | endoplasmic reticulum, vacuole | 79.49 | 74.24 |
| CDY36465 | Canola | cytosol | 78.95 | 74.11 |
| CDX68701 | Canola | endoplasmic reticulum, extracellular | 78.04 | 72.03 |
| GSMUA_Achr1P11380_001 | Banana | cytosol | 46.1 | 68.1 |
| GSMUA_Achr8P09770_001 | Banana | cytosol | 44.65 | 57.48 |
| KRH23933 | Soybean | cytosol | 55.72 | 56.75 |
| KRH39864 | Soybean | cytosol | 54.27 | 56.2 |
| OQU81355 | Sorghum | cytosol, nucleus, plastid | 7.8 | 55.13 |
| VIT_13s0019g01690.t01 | Wine grape | cytosol | 54.99 | 54.79 |
| Solyc01g068240.2.1 | Tomato | cytosol | 49.91 | 51.59 |
| Zm00001d022414_P001 | Maize | cytosol | 48.09 | 48.01 |
| Os07t0661300-01 | Rice | cytosol, plasma membrane | 42.11 | 47.44 |
| PGSC0003DMT400033175 | Potato | mitochondrion | 14.34 | 47.31 |
| PGSC0003DMT400033182 | Potato | cytosol | 11.8 | 46.1 |
| PGSC0003DMT400033184 | Potato | cytosol | 15.24 | 45.9 |
| TraesCS2A01G127200.3 | Wheat | cytosol | 48.09 | 35.43 |
| HORVU2Hr1G022340.2 | Barley | cytosol | 47.91 | 34.78 |
| TraesCS2D01G129600.2 | Wheat | cytosol | 48.09 | 34.37 |
| TraesCS2B01G149000.2 | Wheat | cytosol | 47.73 | 34.11 |
| PGSC0003DMT400033173 | Potato | mitochondrion | 21.96 | 34.08 |
| AT2G22310.1 | Thale cress | nucleus | 16.88 | 25.48 |
| AT4G39910.1 | Thale cress | nucleus | 16.88 | 25.07 |
| Zm00001d007096_P007 | Maize | mitochondrion | 45.92 | 21.39 |
| AT5G10790.1 | Thale cress | cytosol | 16.52 | 16.34 |
| AT4G31670.1 | Thale cress | endoplasmic reticulum, golgi | 17.79 | 15.53 |
| AT2G24640.1 | Thale cress | endoplasmic reticulum, vacuole | 18.69 | 15.33 |
| AT5G65450.2 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, nucleus | 17.79 | 13.07 |
| AT3G14400.1 | Thale cress | mitochondrion | 15.61 | 13.01 |
| AT5G46740.1 | Thale cress | nucleus, plastid | 17.06 | 12.84 |
| AT4G17895.1 | Thale cress | nucleus | 15.97 | 12.66 |
| AT5G57990.1 | Thale cress | nucleus | 17.79 | 11.41 |
| AT1G17110.2 | Thale cress | endoplasmic reticulum, plasma membrane | 17.42 | 10.34 |
| AT4G24560.1 | Thale cress | extracellular, golgi | 18.87 | 10.32 |
Protein Annotations
| MapMan:19.2.3.1.1.10 | Gene3D:3.90.70.10 | EntrezGene:829213 | ProteinID:AEE85824.1 | ProteinID:AEE85825.1 | ProteinID:AEE85826.1 |
| EMBL:AF302672 | ArrayExpress:AT4G30890 | EnsemblPlantsGene:AT4G30890 | RefSeq:AT4G30890 | TAIR:AT4G30890 | RefSeq:AT4G30890-TAIR-G |
| EnsemblPlants:AT4G30890.2 | TAIR:AT4G30890.2 | EMBL:AY127002 | Unigene:At.22252 | EMBL:BT000568 | MEROPS:C19.A14 |
| ProteinID:CAA18204.1 | ProteinID:CAB79807.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008234 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0036459 | InterPro:IPR028889 | RefSeq:NP_001190875.1 | RefSeq:NP_567860.1 |
| RefSeq:NP_974644.1 | PFAM:PF00443 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| ScanProsite:PS00972 | ScanProsite:PS00973 | PFscan:PS50235 | PANTHER:PTHR44747 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH |
| UniProt:Q9FPS3 | SUPFAM:SSF54001 | Symbol:UBP24 | UniParc:UPI00000A69A4 | InterPro:USP_CS | InterPro:USP_dom |
| SEG:seg | : | : | : | : | : |
Description
UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
Coordinates
chr4:-:15036020..15039417
Molecular Weight (calculated)
60443.3 Da
IEP (calculated)
8.112
GRAVY (calculated)
-0.479
Length
551 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.