Factsheet for PGSC0003DMT400033184

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033182	Potato	cytosol	54.1	70.21
PGSC0003DMT400033175	Potato	mitochondrion	33.33	36.53
OQU81355	Sorghum	cytosol, nucleus, plastid	14.75	34.62
PGSC0003DMT400033173	Potato	mitochondrion	64.48	33.24
GSMUA_Achr1P11380_001	Banana	cytosol	51.37	25.2
CDX72275	Canola	cytosol	46.45	22.97
Solyc01g068240.2.1	Tomato	cytosol	61.2	21.01
Bra024037.1-P	Field mustard	cytosol	45.36	20.75
GSMUA_Achr8P09770_001	Banana	cytosol	47.54	20.33
KRH39864	Soybean	cytosol	50.82	17.48
KRH23933	Soybean	cytosol	50.82	17.19
VIT_13s0019g01690.t01	Wine grape	cytosol	50.82	16.82
Os07t0661300-01	Rice	cytosol, plasma membrane	44.81	16.77
CDY23262	Canola	nucleus	47.54	15.9
PGSC0003DMT400034298	Potato	cytosol	45.9	15.73
Bra010268.1-P	Field mustard	cytosol	47.54	15.29
AT4G30890.2	Thale cress	cytosol	45.9	15.24
Zm00001d022414_P001	Maize	cytosol	45.9	15.22
CDY36465	Canola	cytosol	46.99	14.65
CDY28224	Canola	endoplasmic reticulum, vacuole	46.45	14.41
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	46.45	14.41
CDX68701	Canola	endoplasmic reticulum, extracellular	46.45	14.24
TraesCS2A01G127200.3	Wheat	cytosol	47.54	11.63
HORVU2Hr1G022340.2	Barley	cytosol	46.45	11.2
TraesCS2B01G149000.2	Wheat	cytosol	46.99	11.15
TraesCS2D01G129600.2	Wheat	cytosol	46.45	11.02
PGSC0003DMT400093591	Potato	cytosol	12.57	9.16
PGSC0003DMT400032703	Potato	nucleus	18.03	9.02
PGSC0003DMT400093121	Potato	cytosol	14.21	9.0
Zm00001d007096_P007	Maize	mitochondrion	46.45	7.19
PGSC0003DMT400038315	Potato	nucleus	17.49	7.14
PGSC0003DMT400086994	Potato	cytosol	4.92	6.77
PGSC0003DMT400071055	Potato	mitochondrion	21.31	6.31
PGSC0003DMT400089939	Potato	cytosol	11.48	5.61
PGSC0003DMT400088084	Potato	cytosol	9.84	5.36
PGSC0003DMT400046008	Potato	cytosol	15.3	5.27
PGSC0003DMT400076065	Potato	endoplasmic reticulum	9.84	5.17
PGSC0003DMT400045160	Potato	nucleus	16.94	4.35
PGSC0003DMT400028924	Potato	nucleus	21.31	4.21
PGSC0003DMT400096420	Potato	mitochondrion	2.19	2.68
PGSC0003DMT400063184	Potato	plastid	0.0	0.0

Protein Annotations

EntrezGene:107062608	MapMan:19.2.3.1.1.10	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	UniProt:M1AYQ4	PFAM:PF00443	EnsemblPlantsGene:PGSC0003DMG400012744	PGSC:PGSC0003DMG400012744	EnsemblPlants:PGSC0003DMT400033184
PANTHER:PTHR44747	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI000296E52D	RefSeq:XP_015168931.1
SEG:seg	:	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400012744]

Coordinates

chr10:-:16956422..16956973

Molecular Weight (calculated)

20317.7 Da

IEP (calculated)

10.466

GRAVY (calculated)

-0.200

Length

183 amino acids

Sequence
(BLAST)

001: MVSTKGDEEW ETLGPKNKSA VTRTQDFVPS NMSAIIGGQL KSLVKVRGNK ASAIVKPFLV FHLDISYEAV HNIQDALRLF SDPDTLEVYK TTVSIVGVAT
101: ARKSINIQTL PRMMILHLKR FGYKSYGGAK LHRFMQFGTS IASITKPLQH IRKCLYADGF PSSSHSNHSY GSSISLECLR GRK

Best Arabidopsis Sequence Match ( AT4G30890.3 )
(BLAST)

001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V

Arabidopsis Description

UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.