Factsheet for AT5G46740.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87681	Canola	nucleus	55.74	64.76
CDY37145	Canola	cytosol	58.33	64.11
Bra022060.1-P	Field mustard	nucleus	58.06	63.91
CDX77686	Canola	endoplasmic reticulum	56.42	54.7
CDY58499	Canola	endoplasmic reticulum	53.28	54.09
Bra025000.1-P	Field mustard	endoplasmic reticulum	53.69	53.91
AT4G17895.1	Thale cress	nucleus	44.4	46.76
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	19.54	40.62
Solyc09g015580.1.1	Tomato	vacuole	16.26	38.26
Solyc09g015600.1.1	Tomato	extracellular	15.98	37.5
PGSC0003DMT400093121	Potato	cytosol	14.21	35.99
VIT_02s0012g01340.t01	Wine grape	nucleus	25.68	35.81
Solyc08g048410.1.1	Tomato	cytosol	7.65	33.53
Solyc08g048310.1.1	Tomato	extracellular, vacuole	9.7	32.87
Solyc08g021830.1.1	Tomato	cytosol	15.03	31.43
Solyc09g017980.1.1	Tomato	extracellular	8.88	31.4
Solyc09g017990.1.1	Tomato	plastid	20.36	31.24
Solyc08g005080.1.1	Tomato	cytosol	20.49	30.93
Solyc10g047480.1.1	Tomato	nucleus	20.22	30.83
Zm00001d051513_P001	Maize	nucleus	24.59	30.46
PGSC0003DMT400045160	Potato	nucleus	29.37	30.2
KRH39541	Soybean	nucleus	30.46	30.18
PGSC0003DMT400046008	Potato	cytosol	21.72	29.94
KRH74417	Soybean	nucleus	29.51	29.88
Solyc08g076910.2.1	Tomato	nucleus	28.83	29.55
Solyc08g021790.1.1	Tomato	extracellular, vacuole	9.29	29.06
Solyc02g005600.1.1	Tomato	vacuole	19.26	28.89
Solyc09g015610.1.1	Tomato	cytosol	4.92	28.57
Solyc08g023360.1.1	Tomato	extracellular	9.84	28.35
PGSC0003DMT400089939	Potato	cytosol	14.34	28.07
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	21.99	27.47
PGSC0003DMT400093591	Potato	cytosol	9.15	26.69
AT2G22310.1	Thale cress	nucleus	13.25	26.58
AT4G39910.1	Thale cress	nucleus	13.25	26.15
TraesCS6A01G264800.1	Wheat	nucleus	26.09	26.02
HORVU6Hr1G067180.4	Barley	nucleus	26.09	25.85
TraesCS6D01G250100.1	Wheat	nucleus	26.09	25.85
TraesCS6B01G291800.1	Wheat	nucleus	25.82	25.58
OQU85579	Sorghum	nucleus	25.27	24.83
Zm00001d017686_P002	Maize	mitochondrion, nucleus	24.73	24.46
PGSC0003DMT400088084	Potato	cytosol	10.93	23.81
AT4G31670.1	Thale cress	endoplasmic reticulum, golgi	15.85	18.38
AT5G10790.1	Thale cress	cytosol	13.11	17.24
AT5G57990.1	Thale cress	nucleus	20.22	17.23
AT3G14400.1	Thale cress	mitochondrion	15.44	17.1
AT4G30890.2	Thale cress	cytosol	12.84	17.06
AT2G24640.1	Thale cress	endoplasmic reticulum, vacuole	15.3	16.67
AT5G65450.2	Thale cress	endoplasmic reticulum, golgi, mitochondrion, nucleus	15.03	14.67
AT4G24560.1	Thale cress	extracellular, golgi	17.35	12.6
AT1G17110.2	Thale cress	endoplasmic reticulum, plasma membrane	15.16	11.96

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	EntrezGene:834717	ProteinID:AED95420.1	EMBL:AF302669	ArrayExpress:AT5G46740
EnsemblPlantsGene:AT5G46740	RefSeq:AT5G46740	TAIR:AT5G46740	RefSeq:AT5G46740-TAIR-G	EnsemblPlants:AT5G46740.1	TAIR:AT5G46740.1
Unigene:At.7737	ProteinID:BAB08918.1	MEROPS:C19.A15	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234
GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
InterPro:IPR028889	RefSeq:NP_568667.1	PFAM:PF00443	PO:PO:0000037	PO:PO:0000084	PO:PO:0000293
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007611	PO:PO:0007616
PO:PO:0009005	PO:PO:0009009	PO:PO:0009010	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009052	PO:PO:0025022	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033
PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	UniProt:Q9FIQ1	SUPFAM:SSF54001	Symbol:UBP21
UniParc:UPI000009D552	InterPro:USP_CS	InterPro:USP_dom	SEG:seg	:	:

Description

UBP21Ubiquitin carboxyl-terminal hydrolase 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIQ1]

Coordinates

chr5:-:18965271..18968798

Molecular Weight (calculated)

82421.2 Da

IEP (calculated)

6.337

GRAVY (calculated)

-0.704

Length

732 amino acids

Sequence
(BLAST)

001: MAEFSDPPPS NLSSSHKLTK PNQTLDESSP TAPIRDLVTN SLSLSSPIRQ IQALSPAKPD GSSSSPPDKT LNFNPEENRD VNPDESSSSP SDKTLIAPPA
101: QISPVSNNNH LRITNTSDSY LYRPPRRYIE YESDDDELNK MEPTKPLQLS WWYPRIEPTG VGAGLYNSGN TCFIASVLQC FTHTVPLIDS LRSFMYGNPC
201: NCGNEKFCVM QALRDHIELA LRSSGYGINI DRFRDNLTYF SSDFMINHQE DAHEFLQSFL DKLERCCLDP KNQLGSVSSQ DLNIVDNVFG GGLMSTLCCC
301: NCNSVSNTFE PSLGWSLEIE DVNTLWKALE SFTCVEKLED QLTCDNCKEK VTKEKQLRFD KLPPVATFHL KRFTNDGVTM EKIFDHIEFP LELDLSPFMS
401: SNHDPEVSTR YHLYAFVEHI GIRATFGHYS SYVRSAPETW HNFDDSKVTR ISEERVLSRP AYILFYAREG TPWFSSTFEQ LKTVFEATPL HFSPVSVLDN
501: SYESVDNSSK ACNDSVGVSI PDVKWPDSCC QEPKEEVFHS AESSNNEDSS AMIDALGSPQ SEKPFAETSQ QTEPESCPTE NKAYIDKSEK PFAETSQPKE
601: PKPFADRASI DAPLLKVQNQ DISPKRKAGE RATLGGPKLK YQKPNSHQKR QGTFQIQRAH LQTKKQEESR KTKRPLFRSN VAASAPDPKY KNHALSYLNR
701: AQTPRARKLA NALSDSPTKK KKSSNMRRSI KL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.