Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021031.1-P | Field mustard | nucleus | 99.69 | 99.69 |
| AT4G17895.1 | Thale cress | nucleus | 57.32 | 52.95 |
| CDX87681 | Canola | nucleus | 41.9 | 42.7 |
| GSMUA_Achr4P19070_001 | Banana | cytosol, golgi, mitochondrion, plastid | 22.59 | 41.19 |
| CDY37145 | Canola | cytosol | 42.52 | 40.99 |
| Solyc09g015600.1.1 | Tomato | extracellular | 19.31 | 39.74 |
| PGSC0003DMT400093121 | Potato | cytosol | 17.29 | 38.41 |
| Solyc09g015580.1.1 | Tomato | vacuole | 18.54 | 38.26 |
| CDY58499 | Canola | endoplasmic reticulum | 41.74 | 37.17 |
| CDX77686 | Canola | endoplasmic reticulum | 42.83 | 36.42 |
| Solyc08g048310.1.1 | Tomato | extracellular, vacuole | 11.68 | 34.72 |
| Solyc08g005080.1.1 | Tomato | cytosol | 25.86 | 34.23 |
| Solyc08g021830.1.1 | Tomato | cytosol | 18.54 | 34.0 |
| Solyc08g048410.1.1 | Tomato | cytosol | 8.72 | 33.53 |
| Solyc09g017980.1.1 | Tomato | extracellular | 10.75 | 33.33 |
| VIT_02s0012g01340.t01 | Wine grape | nucleus | 27.26 | 33.33 |
| Solyc08g021790.1.1 | Tomato | extracellular, vacuole | 12.15 | 33.33 |
| PGSC0003DMT400046008 | Potato | cytosol | 27.41 | 33.15 |
| Solyc09g015610.1.1 | Tomato | cytosol | 6.23 | 31.75 |
| Solyc09g017990.1.1 | Tomato | plastid | 23.05 | 31.03 |
| Solyc10g047480.1.1 | Tomato | nucleus | 23.05 | 30.83 |
| Solyc08g023360.1.1 | Tomato | extracellular | 11.99 | 30.32 |
| Solyc02g005600.1.1 | Tomato | vacuole | 22.59 | 29.71 |
| PGSC0003DMT400045160 | Potato | nucleus | 32.09 | 28.93 |
| Solyc08g076910.2.1 | Tomato | nucleus | 31.78 | 28.57 |
| KRH74417 | Soybean | nucleus | 31.78 | 28.22 |
| KRH39541 | Soybean | nucleus | 32.24 | 28.01 |
| PGSC0003DMT400089939 | Potato | cytosol | 16.2 | 27.81 |
| CDX76934 | Canola | nucleus | 15.11 | 27.4 |
| GSMUA_Achr5P13990_001 | Banana | endoplasmic reticulum | 24.77 | 27.13 |
| PGSC0003DMT400093591 | Potato | cytosol | 10.59 | 27.09 |
| CDY13770 | Canola | nucleus | 14.95 | 26.97 |
| CDX69375 | Canola | nucleus | 15.26 | 26.42 |
| CDY68864 | Canola | nucleus | 15.26 | 26.34 |
| Zm00001d051513_P001 | Maize | nucleus | 24.14 | 26.23 |
| CDY63898 | Canola | nucleus | 15.26 | 24.62 |
| CDX72275 | Canola | cytosol | 13.4 | 23.24 |
| PGSC0003DMT400088084 | Potato | cytosol | 12.15 | 23.21 |
| Zm00001d017686_P002 | Maize | mitochondrion, nucleus | 25.7 | 22.3 |
| TraesCS6A01G264800.1 | Wheat | nucleus | 25.08 | 21.93 |
| TraesCS6D01G250100.1 | Wheat | nucleus | 24.92 | 21.65 |
| OQU85579 | Sorghum | nucleus | 25.08 | 21.61 |
| TraesCS6B01G291800.1 | Wheat | nucleus | 24.77 | 21.52 |
| HORVU6Hr1G067180.4 | Barley | nucleus | 24.61 | 21.38 |
| CDY68683 | Canola | endoplasmic reticulum, vacuole | 15.42 | 20.33 |
| CDX75188 | Canola | vacuole | 18.85 | 19.8 |
| CDX68773 | Canola | nucleus, plasma membrane | 18.85 | 19.71 |
| CDX87682 | Canola | cytosol | 0.93 | 18.18 |
| CDY50263 | Canola | cytosol | 7.63 | 18.08 |
| CDY45587 | Canola | endoplasmic reticulum, vacuole | 17.6 | 17.85 |
| CDY20330 | Canola | vacuole | 17.76 | 17.73 |
| CDY32735 | Canola | nucleus | 22.12 | 17.73 |
| CDY02782 | Canola | nucleus | 21.96 | 17.6 |
| CDX88651 | Canola | nucleus, plastid | 22.12 | 17.23 |
| CDY11838 | Canola | nucleus, plastid | 21.96 | 17.22 |
| CDX76801 | Canola | endoplasmic reticulum, golgi, vacuole | 17.45 | 17.2 |
| CDY34761 | Canola | endoplasmic reticulum, vacuole | 17.13 | 17.08 |
| CDY55010 | Canola | nucleus | 22.59 | 17.06 |
| CDY57464 | Canola | nucleus | 22.43 | 16.98 |
| CDX75770 | Canola | mitochondrion, nucleus | 16.82 | 16.27 |
| CDY23262 | Canola | nucleus | 13.4 | 15.72 |
| CDX98449 | Canola | mitochondrion | 16.98 | 15.48 |
| CDX97571 | Canola | mitochondrion | 16.98 | 15.4 |
| CDX85744 | Canola | cytosol | 13.55 | 14.95 |
| CDY08792 | Canola | vacuole | 17.29 | 14.82 |
| CDY28224 | Canola | endoplasmic reticulum, vacuole | 13.55 | 14.75 |
| CDY14564 | Canola | golgi | 17.45 | 14.7 |
| CDY36465 | Canola | cytosol | 13.4 | 14.65 |
| CDY40119 | Canola | nucleus | 13.24 | 14.55 |
| CDX68701 | Canola | endoplasmic reticulum, extracellular | 13.4 | 14.41 |
| CDX96790 | Canola | nucleus | 18.22 | 14.01 |
| CDX83925 | Canola | nucleus | 18.38 | 13.93 |
| CDY48465 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 18.07 | 13.24 |
| CDY65125 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 17.76 | 13.0 |
| CDY11021 | Canola | golgi | 19.63 | 12.49 |
| CDX92643 | Canola | golgi | 19.31 | 12.24 |
| CDY03441 | Canola | golgi | 18.54 | 11.75 |
| CDY34291 | Canola | golgi | 18.54 | 11.67 |
Protein Annotations
| Gene3D:3.90.70.10 | MapMan:35.1 | GO:A0A078CNC1 | EnsemblPlants:CDX76553 | ProteinID:CDX76553 | ProteinID:CDX76553.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0036459 |
| EnsemblPlantsGene:GSBRNA2T00126989001 | InterPro:IPR028889 | PFAM:PF00443 | ScanProsite:PS00972 | ScanProsite:PS00973 | PFscan:PS50235 |
| PANTHER:PTHR44033 | PANTHER:PTHR44033:SF1 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SUPFAM:SSF54001 | UniParc:UPI0004EDF07D |
| InterPro:USP_CS | InterPro:USP_dom | SEG:seg | : | : | : |
Description
BnaA08g08470DUbiquitin carboxyl-terminal hydrolase 20 [Source:Projected from Arabidopsis thaliana (AT4G17895) UniProtKB/Swiss-Prot;Acc:Q9FPS7]
Coordinates
chrLK031807:-:2017747..2020448
Molecular Weight (calculated)
72466.2 Da
IEP (calculated)
4.445
GRAVY (calculated)
-0.585
Length
642 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVANSEFSS SILPPSPLIP NPVETIDESI GNNQVSFSTE EVSVPPRNSD EPLSTPLDET LIAPSPLRLE HGECSDAQVM NKPINHSKSN DTHLDICLSK
101: SPDNRQQWSP NVSPGSDTDV DSGNQPLWRF RQKPPEIVES PCVGAGLLNL GNSCFINSVL QCFTHTVPLI ESLYAYQYED PCNCNQRFCV IRALRYHIGV
201: ALETTSVFSI SPVYFFNNLR CFSPDFRRYQ QEDAHEFLHA FLNKLEICCL NRRNDVNFVQ HIFGGRLVSE LRCCNCNYVS ETFEDSLGLS LEIEDVDNLQ
301: SALDSFTRVE KLEEQMKCDN CDEKVSKEKR LLLQNLPQVI TFHLKRFKNN GYFMLKNCNY VEFPLELDLQ PYMSNDQVAA KYYLYALVKH YGSLAYGHYS
401: SFVRSAPSIW HKFNDKQVTR VDEDCVLSQN SYILFYAREG TPWFSTAIEE LHPMTEEDTS SEYPSPKSVS DPSNEECSSE ISSENVSKKG CGSAGVSDLL
501: HVETEESCGT HSDEPKEDNE LSQSEESSDE ESSMEVLLDQ HDPDDDSNNS CTEKEADSCF ATERATTGVA FSPYLIGSSP KKPEGNFQIQ LERVEAKKNY
601: EEEEPYKQPL LISLMKKPPP RDRELGEAMS TSGSAQKKLK TS
101: SPDNRQQWSP NVSPGSDTDV DSGNQPLWRF RQKPPEIVES PCVGAGLLNL GNSCFINSVL QCFTHTVPLI ESLYAYQYED PCNCNQRFCV IRALRYHIGV
201: ALETTSVFSI SPVYFFNNLR CFSPDFRRYQ QEDAHEFLHA FLNKLEICCL NRRNDVNFVQ HIFGGRLVSE LRCCNCNYVS ETFEDSLGLS LEIEDVDNLQ
301: SALDSFTRVE KLEEQMKCDN CDEKVSKEKR LLLQNLPQVI TFHLKRFKNN GYFMLKNCNY VEFPLELDLQ PYMSNDQVAA KYYLYALVKH YGSLAYGHYS
401: SFVRSAPSIW HKFNDKQVTR VDEDCVLSQN SYILFYAREG TPWFSTAIEE LHPMTEEDTS SEYPSPKSVS DPSNEECSSE ISSENVSKKG CGSAGVSDLL
501: HVETEESCGT HSDEPKEDNE LSQSEESSDE ESSMEVLLDQ HDPDDDSNNS CTEKEADSCF ATERATTGVA FSPYLIGSSP KKPEGNFQIQ LERVEAKKNY
601: EEEEPYKQPL LISLMKKPPP RDRELGEAMS TSGSAQKKLK TS
001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT
Arabidopsis Description
UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.