Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P19170_001 | Banana | cytosol | 23.62 | 47.76 |
| CDY13770 | Canola | nucleus | 61.25 | 46.63 |
| CDX76934 | Canola | nucleus | 60.15 | 46.05 |
| CDY68864 | Canola | nucleus | 59.41 | 43.28 |
| CDX69375 | Canola | nucleus | 59.04 | 43.13 |
| CDY63898 | Canola | nucleus | 58.67 | 39.95 |
| CDY68683 | Canola | endoplasmic reticulum, vacuole | 59.41 | 33.06 |
| CDX72275 | Canola | cytosol | 16.97 | 12.43 |
| CDY23262 | Canola | nucleus | 17.34 | 8.59 |
| CDY36465 | Canola | cytosol | 17.71 | 8.18 |
| CDY28224 | Canola | endoplasmic reticulum, vacuole | 17.71 | 8.14 |
| CDX68701 | Canola | endoplasmic reticulum, extracellular | 17.71 | 8.04 |
| CDX85744 | Canola | cytosol | 16.61 | 7.73 |
| CDY40119 | Canola | nucleus | 16.61 | 7.71 |
| CDX75188 | Canola | vacuole | 17.34 | 7.69 |
| CDX75770 | Canola | mitochondrion, nucleus | 18.82 | 7.68 |
| CDX68773 | Canola | nucleus, plasma membrane | 17.34 | 7.65 |
| CDX76553 | Canola | cytosol | 18.08 | 7.63 |
| CDX87681 | Canola | nucleus | 16.24 | 6.98 |
| CDX98449 | Canola | mitochondrion | 18.08 | 6.96 |
| CDY45587 | Canola | endoplasmic reticulum, vacuole | 16.24 | 6.95 |
| CDX97571 | Canola | mitochondrion | 18.08 | 6.92 |
| CDY20330 | Canola | vacuole | 16.24 | 6.84 |
| CDX76801 | Canola | endoplasmic reticulum, golgi, vacuole | 15.87 | 6.61 |
| CDY34761 | Canola | endoplasmic reticulum, vacuole | 15.5 | 6.52 |
| CDY37145 | Canola | cytosol | 15.87 | 6.46 |
| CDY58499 | Canola | endoplasmic reticulum | 16.97 | 6.38 |
| CDY08792 | Canola | vacuole | 16.61 | 6.01 |
| CDX77686 | Canola | endoplasmic reticulum | 16.61 | 5.96 |
| CDY14564 | Canola | golgi | 16.61 | 5.91 |
| CDY11838 | Canola | nucleus, plastid | 17.34 | 5.74 |
| CDX88651 | Canola | nucleus, plastid | 17.34 | 5.7 |
| CDY55010 | Canola | nucleus | 17.71 | 5.65 |
| CDX96790 | Canola | nucleus | 17.34 | 5.63 |
| CDX83925 | Canola | nucleus | 17.34 | 5.55 |
| CDY57464 | Canola | nucleus | 17.34 | 5.54 |
| CDY48465 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 17.71 | 5.48 |
| CDY65125 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 17.71 | 5.47 |
| CDY32735 | Canola | nucleus | 15.87 | 5.37 |
| CDY02782 | Canola | nucleus | 15.87 | 5.37 |
| CDX92643 | Canola | golgi | 17.71 | 4.74 |
| CDY11021 | Canola | golgi | 17.34 | 4.66 |
| CDY03441 | Canola | golgi | 16.97 | 4.54 |
| CDY34291 | Canola | golgi | 16.61 | 4.41 |
| CDX87682 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:19.2.3.1.1.2 | Gene3D:3.90.70.10 | GO:A0A078IMK4 | UniProt:A0A078IMK4 | EnsemblPlants:CDY50263 | ProteinID:CDY50263 |
| ProteinID:CDY50263.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0036459 | EnsemblPlantsGene:GSBRNA2T00096259001 | InterPro:IPR028889 | PFAM:PF00443 | ScanProsite:PS00972 | PFscan:PS50235 |
| PANTHER:PTHR43942 | PANTHER:PTHR43942:SF5 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SUPFAM:SSF54001 | UniParc:UPI0004EDDEB1 |
| InterPro:USP_CS | InterPro:USP_dom | SEG:seg | : | : | : |
Description
BnaC03g61300DBnaC03g61300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMK4]
Coordinates
chrLK032894:+:103113..104524
Molecular Weight (calculated)
31539.6 Da
IEP (calculated)
9.441
GRAVY (calculated)
-0.572
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVAGSKLEK ALGEQFPEGE RYFGFENFGN TCYCNSVLQD RKTCLCSIFA LYFCAPFREY EENLLTCLAD LFSQISSQKK KTGVISPKRF VQRLKKQNVL
101: FRSYMHQDAH EFLNYLLNEL DDILEKEAKT DNETSSSPGK ISNGPKLLQA NGVHKEPTVT WVHKIFQVTS SSFWLHYYTR VKLNRVPKPN QIINHIPSSH
201: QTKSNHLKKK NLLLYITNMA SSSQNIFQKS NANTFDQYFD QTFENFTICH QEETRKQRKM FNNILFLKTL N
101: FRSYMHQDAH EFLNYLLNEL DDILEKEAKT DNETSSSPGK ISNGPKLLQA NGVHKEPTVT WVHKIFQVTS SSFWLHYYTR VKLNRVPKPN QIINHIPSSH
201: QTKSNHLKKK NLLLYITNMA SSSQNIFQKS NANTFDQYFD QTFENFTICH QEETRKQRKM FNNILFLKTL N
001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCAPFREQ LLEHYANNKA DAEENLLTCL ADLFSQISSQ KKKTGVIAPK RFVQRLKKQN
101: ELFRSYMHQD AHEFLNYLLN ELVEILEKET QATKADNETS SSPEKIANVL KAPLANGVHK EPIVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD
201: IEQNSSITSC LKNFSSTETL HAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTVDEYVD IEYSLFAVVV
301: HVGSGPNHGH YVSLVKSHNH WLFFDDESVE IIEESAVQTF FGSSQEYSSN TDHGYILLYE SLGTR
101: ELFRSYMHQD AHEFLNYLLN ELVEILEKET QATKADNETS SSPEKIANVL KAPLANGVHK EPIVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD
201: IEQNSSITSC LKNFSSTETL HAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTVDEYVD IEYSLFAVVV
301: HVGSGPNHGH YVSLVKSHNH WLFFDDESVE IIEESAVQTF FGSSQEYSSN TDHGYILLYE SLGTR
Arabidopsis Description
UBP4UBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178W1M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.