CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14400.1	CDY42827	AT2G42580.1	19000166
AT3G14400.1	CDY51514	AT2G42580.1	19000166
AT3G14400.1	CDY55390	AT2G42580.1	19000166
AT3G14400.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97571	Canola	mitochondrion	98.58	98.02
Bra027341.1-P	Field mustard	mitochondrion	94.32	96.65
AT3G14400.1	Thale cress	mitochondrion	73.44	78.21
CDX75770	Canola	mitochondrion, nucleus	72.16	76.51
Zm00001d000312_P002	Maize	plastid	21.31	53.38
VIT_19s0093g00560.t01	Wine grape	mitochondrion	46.88	51.97
KRH43852	Soybean	nucleus	47.16	51.79
KRH13611	Soybean	nucleus	46.31	50.0
PGSC0003DMT400071055	Potato	mitochondrion	42.33	48.22
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	46.16	47.38
GSMUA_Achr9P10330_001	Banana	mitochondrion	38.92	43.98
Os05t0510300-01	Rice	plastid	35.09	38.35
HORVU1Hr1G077630.2	Barley	plastid	34.8	37.75
TraesCS1D01G331300.1	Wheat	plastid	34.52	37.62
TraesCS1B01G342600.2	Wheat	plastid	34.38	37.46
TraesCS1A01G329200.2	Wheat	plastid	34.52	37.44
KXG22316	Sorghum	plastid	33.81	35.16
Zm00001d010710_P002	Maize	plastid	33.66	34.7
CDX76934	Canola	nucleus	13.35	26.55
CDX69375	Canola	nucleus	13.92	26.42
CDY68864	Canola	nucleus	13.92	26.34
CDY13770	Canola	nucleus	13.07	25.84
CDY63898	Canola	nucleus	13.92	24.62
CDX72275	Canola	cytosol	12.78	24.32
Zm00001d000313_P001	Maize	nucleus	12.22	23.24
CDX75188	Canola	vacuole	18.04	20.79
CDX68773	Canola	nucleus, plasma membrane	17.9	20.52
CDY34761	Canola	endoplasmic reticulum, vacuole	18.75	20.5
CDX76801	Canola	endoplasmic reticulum, golgi, vacuole	18.75	20.28
CDY45587	Canola	endoplasmic reticulum, vacuole	18.18	20.22
CDY68683	Canola	endoplasmic reticulum, vacuole	13.92	20.12
CDY20330	Canola	vacuole	18.32	20.06
CDY50263	Canola	cytosol	6.96	18.08
CDX87681	Canola	nucleus	15.91	17.78
CDY32735	Canola	nucleus	20.17	17.73
CDY02782	Canola	nucleus	20.17	17.73
CDY55010	Canola	nucleus	21.02	17.41
CDX88651	Canola	nucleus, plastid	20.31	17.35
CDY11838	Canola	nucleus, plastid	20.17	17.34
CDY37145	Canola	cytosol	16.34	17.27
CDY08792	Canola	vacuole	18.32	17.22
CDY57464	Canola	nucleus	20.6	17.1
CDY14564	Canola	golgi	18.47	17.06
CDX76553	Canola	cytosol	15.48	16.98
CDX85744	Canola	cytosol	13.07	15.81
CDY23262	Canola	nucleus	12.22	15.72
CDX96790	Canola	nucleus	18.47	15.57
CDY58499	Canola	endoplasmic reticulum	15.91	15.53
CDY40119	Canola	nucleus	12.64	15.24
CDX77686	Canola	endoplasmic reticulum	16.34	15.23
CDX83925	Canola	nucleus	18.32	15.23
CDY28224	Canola	endoplasmic reticulum, vacuole	12.64	15.08
CDY48465	Canola	endoplasmic reticulum, plasma membrane, vacuole	18.75	15.07
CDY65125	Canola	endoplasmic reticulum, plasma membrane, vacuole	18.75	15.05
CDY36465	Canola	cytosol	12.36	14.82
CDX68701	Canola	endoplasmic reticulum, extracellular	12.5	14.74
CDX92643	Canola	golgi	19.32	13.43
CDY11021	Canola	golgi	19.18	13.38
CDY34291	Canola	golgi	18.75	12.94
CDY03441	Canola	golgi	18.61	12.93
CDX87682	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:19.2.3.1.1.11	Gene3D:3.90.70.10	GO:A0A078ECC6	EnsemblPlants:CDX98449	ProteinID:CDX98449	ProteinID:CDX98449.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	EnsemblPlantsGene:GSBRNA2T00106061001	InterPro:IPR028889	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973
PFscan:PS50235	PANTHER:PTHR45511	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0004EF3C63
InterPro:USP_CS	InterPro:USP_dom	SEG:seg	:	:	:

Description

BnaC05g39260D

Coordinates

chrLK031905:-:169772..173244

Molecular Weight (calculated)

78116.4 Da

IEP (calculated)

8.503

GRAVY (calculated)

-0.625

Length

704 amino acids

Sequence
(BLAST)

001: MGYKLQMSWM PSLLSQKRRN GPPLGLRNLG NTCYLNSVLQ CLTYTPPLAN FCLNHKHSSH CDSFVDGERK RDCPFCIVEK RIARSLSVDH AIDAPNKISS
101: CLKIFAEHFK FGRQEDAHEF LRYVIDACHN TSLRLKKLRT KGGGGAESVN GSSSTEVKEI FGGAMQSQVK CLPCGAESNK ADEIMDISLE ISNSSSVKES
201: LQKFFQPEIL DGNNKYKCES CKKLVTARKQ MSVLQAPNIL VIQLKRFEGI YGGKIDKPIT FGEILLLSTF MSKSSKDPQP EYKLFGIIVH SGYSPESGHY
301: YAYVKDSLNR WFCCNDASVT HSTLQEVLSE KAYILFFSRI NQRPASAKNL VTTSNGTTSH EVNGSETPRP KKFIGPLNNV SMQQPRAEQS FKKDNNNLAS
401: SKPHQFIRPL KDANMKPREE QPFHKKNADS PQVEKAPLKP HAKISISVNL GAKRVSPTVN GRLSFDQDQD LAPEADKENI GSVSAKRVYT CSEKKFGTEN
501: GGNGIKENGS AQASSSSSNN NEVSLHPHER SNGGDHHHKD SLYSCKSNGS QNGTDQEEIE KDGVSKPQPK ALESSTNGDD RCIFLRKDKS SRDQLEAIKE
601: SLQEDVSSYL RSCGWYDEVH KSMRAKKRLL GELSGGDCED GNDLKRRLIA DVESSLSQIP DELKADLLQS SSVLSVITYA HIACSIPSVV MQREGIEIFP
701: VSVK

Best Arabidopsis Sequence Match ( AT3G14400.1 )
(BLAST)

001: MGFKLQMSWM PSLLSQKRRN GPPLGLRNLG NTCYLNSVLQ CLTFTPPLAN FCLTHKHSSH CDTYVDGERK RDCPFCIVEK RIARSLSVDL TTDAPNKISS
101: CLKIFAEHFK LGRQEDAHEF LRYVIDACHN TSLRLKKLRY NGNEPFNGNS VVKEIFGGAL QSQVKCLSCG AESNKADEIM DISLEILQSS SVKESLQKFF
201: QSEILDGNNK YRCESCEKLV TARKQMSILQ APNILVIQLK RFGGIFGGKI DKAISFGEIL VLSNFMSKAS KDPQPEYKLF GIIVHSGFSP ESGHYYAYVK
301: DSLGRWYCCN DSFVSLSTLQ EVLSEKAYIL FFSRSNQRPA SAKTLVTSNG TTSHEVNGCE TSNPQKFIGP LNGFNMKPQA EQSFQKGNLA SSKPHKFIRP
401: KPRAEQAPLE DNLLSSKVEK APLRPHAKVS ISVNLGAKRV SPVNGRLSFH QDENIAPKAN KENSVSVLPT KVNSGTERKF GTENGGNGVK ENGSAPGSSN
501: HKVALHPHER SNGSSNGGDH HKDNLHPCGS NGSQNGTAHP ETERNGVSTT QSKGLCSSTK EDPCILLRKD ESSRNELEAI KESLKKDALS HLRSCGWYDK
601: VLISMHAKKR LRTEQSGGED GSDLKRRLIE DVKSSLKSQI PEELKADLVN RIWEISKKKY S

Arabidopsis Description

UBP25Ubiquitin carboxyl-terminal hydrolase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.