CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006790.1-P	Field mustard	nucleus, plastid	100.0	99.16
CDY11838	Canola	nucleus, plastid	93.81	94.38
CDY57464	Canola	nucleus	74.15	72.05
CDY32735	Canola	nucleus	69.3	71.29
CDY55010	Canola	nucleus	72.94	70.71
CDY02782	Canola	nucleus	68.08	70.04
AT5G57990.1	Thale cress	nucleus	70.27	67.4
KRH72298	Soybean	cytosol, plastid	33.25	53.94
GSMUA_Achr3P04660_001	Banana	nucleus	33.01	45.33
VIT_19s0014g00210.t01	Wine grape	nucleus	43.33	39.93
Solyc07g005530.2.1	Tomato	nucleus	43.08	38.46
PGSC0003DMT400028924	Potato	nucleus	43.2	38.44
KRH03060	Soybean	nucleus	41.99	38.32
VIT_00s0174g00260.t01	Wine grape	nucleus	46.0	38.01
Os06t0184300-01	Rice	mitochondrion	40.29	35.93
TraesCS7A01G147900.1	Wheat	nucleus	39.32	35.18
HORVU7Hr1G030300.1	Barley	nucleus	39.68	35.16
TraesCS7B01G051400.2	Wheat	nucleus	39.68	34.82
TraesCS7D01G149800.1	Wheat	nucleus	39.44	34.69
GSMUA_Achr4P01920_001	Banana	nucleus	40.29	34.37
EER89337	Sorghum	nucleus	38.23	34.35
Zm00001d045104_P005	Maize	nucleus	36.89	33.67
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	31.19	30.27
TraesCS6D01G339500.1	Wheat	nucleus	36.29	28.94
TraesCS6B01G389500.1	Wheat	nucleus	36.16	27.88
TraesCS6A01G357500.1	Wheat	mitochondrion, nucleus	36.16	27.82
CDX76934	Canola	nucleus	11.65	27.12
CDY13770	Canola	nucleus	11.65	26.97
Os02t0795000-01	Rice	nucleus	37.5	26.08
CDX69375	Canola	nucleus	11.41	25.34
CDY68864	Canola	nucleus	11.41	25.27
CDX72275	Canola	cytosol	11.04	24.59
CDY63898	Canola	nucleus	11.65	24.12
CDX87681	Canola	nucleus	17.35	22.7
CDY37145	Canola	cytosol	17.96	22.22
CDX76553	Canola	cytosol	17.23	22.12
CDX76801	Canola	endoplasmic reticulum, golgi, vacuole	17.11	21.66
CDY45587	Canola	endoplasmic reticulum, vacuole	16.63	21.64
CDX75770	Canola	mitochondrion, nucleus	17.35	21.54
CDY20330	Canola	vacuole	16.75	21.46
CDY34761	Canola	endoplasmic reticulum, vacuole	16.75	21.43
CDX75188	Canola	vacuole	15.78	21.28
CDX68773	Canola	nucleus, plasma membrane	15.78	21.17
CDX97571	Canola	mitochondrion	17.72	20.62
CDX98449	Canola	mitochondrion	17.35	20.31
CDX77686	Canola	endoplasmic reticulum	18.33	20.0
CDY58499	Canola	endoplasmic reticulum	17.48	19.97
CDY68683	Canola	endoplasmic reticulum, vacuole	11.41	19.3
CDX85744	Canola	cytosol	12.62	17.87
CDY23262	Canola	nucleus	11.77	17.73
CDY40119	Canola	nucleus	12.5	17.64
CDY50263	Canola	cytosol	5.7	17.34
CDX83925	Canola	nucleus	17.6	17.12
CDY08792	Canola	vacuole	15.53	17.09
CDX96790	Canola	nucleus	17.11	16.89
CDY14564	Canola	golgi	15.41	16.67
CDY28224	Canola	endoplasmic reticulum, vacuole	11.77	16.44
CDY36465	Canola	cytosol	11.65	16.35
CDX68701	Canola	endoplasmic reticulum, extracellular	11.53	15.91
CDY65125	Canola	endoplasmic reticulum, plasma membrane, vacuole	16.63	15.62
CDY48465	Canola	endoplasmic reticulum, plasma membrane, vacuole	16.5	15.53
CDX87682	Canola	cytosol	0.61	15.15
CDY11021	Canola	golgi	17.11	13.97
CDX92643	Canola	golgi	17.11	13.92
CDY03441	Canola	golgi	16.63	13.52
CDY34291	Canola	golgi	16.26	13.14

Protein Annotations

MapMan:19.2.3.1.1.9	Gene3D:3.90.70.10	GO:A0A078DHC9	EnsemblPlants:CDX88651	ProteinID:CDX88651	ProteinID:CDX88651.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
EnsemblPlantsGene:GSBRNA2T00148694001	InterPro:IPR028889	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235
PANTHER:PTHR44033	PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0004EEF01D
InterPro:USP_CS	InterPro:USP_dom	SEG:seg	:	:	:

Description

BnaA03g09980D

Coordinates

chrLK031856:-:344200..347916

Molecular Weight (calculated)

90909.4 Da

IEP (calculated)

10.138

GRAVY (calculated)

-0.613

Length

824 amino acids

Sequence
(BLAST)

001: MEAASNGSCA VSSSSASAVF RKIEFHPARK PFNGFSNGKS DFKIETLNPS SSSANKQAFF SSPSFKKRDG SDSLENGLDR ELTFNRTIRK IGAGLENLGN
101: TCFLNSVLQC LTYTEPLAAY LQDVGHERRC NVAGFCALCA MQKHVRTALQ ATGKIVAPKY LVSNLRCVSR NFRNCRQEDA HEYMINLLEC MHKCSLPSGV
201: SSESSDAYRS SLVHKIFGGS LRSQVKCAQC SHSSDKFDPF LDLSLDISKA DSLQRALTRF TAVELLDDGA KVYQCERCKQ KVKATKELTV SKAPYVLTVH
301: LKRFEAHRSE KIDKKVEFAS AVDMKPFVSG PYEGNLKYTL YGVLVHYGRS IHSGHYACFV RTSSGMWYSL DDNRVLQVSE KNVFNQKAYM LFYVRDRQNT
401: SPKNVVPMVK KENLPTARAS VIISSSNRND QVSGSTVMKA SCFNGLGANG RAPLRSCDQG APAVFNQKDL NAKETQKDPP SSVDAKEILK RENGAAPLKS
501: CGLSATAVLS QKDSNSKENL QKELPLSQAN GEGSLVKEKM KAACATLPGK ASPLLDGSRN AQILVNLPTS VANKDEETLN TARKTRKGKT KTQQVGLKLF
601: KLALGVRKKM KQKRGRSSAV KVIPEELRSK KGATDQERST SEITSEVASG LPGKDNIVSV HNERNMNSNG NMLLGSATGD LKERANQNGA VLASDQQPPL
701: RSSDLSKASQ IAKRKRESSK DEQIVLQKDE PTILTRGLPE TVVAKWDEEV SASKKMGNNE GTKIGYVADE WDEEYDRGKK KKIRIKEEMY KGPNPFQMIA
801: SRKQTDTKKK WTQRMNTAKT GLRI

Best Arabidopsis Sequence Match ( AT5G57990.1 )
(BLAST)

001: MEVATSSTEI TIQTDRDPSS NNNGSCAVAS STASAVFRKI EFHPARKPFN GFSNGRSDFK IETLNPCSSN QRLLSAPSAK KPDSSDLLEH GFEPDLTFSI
101: TFRKIGAGLQ NLGNTCFLNS VLQCLTYTEP LAATLQTAAH QKYCHVAGFC ALCAIQKHVR TARQANGRIL APKDLVSNLR CISRNFRNCR QEDAHEYMIN
201: LLECMHKCSL PSGVPSESSD AYRRSLVHKI FGGSLRSQVK CEQCSHCSNK FDPFLDLSLD ISKADSLQRA LSRFTAVELL DNGAKVYQCE RCKQKVKAKK
301: QLTVSKAPYV LTVHLKRFEA HRSEKIDRKV DFTSAIDMKP FVSGPHEGNL KYTLYGVLVH YGRSSHSGHY ACFVRTSSGM WYSLDDNRVV QVSEKTVFNQ
401: KAYMLFYVRD RQNAVPKNSV PVVKKESFAT NRASLIVASN IKDQVNGSTV IKECGFGALV ANGLAPLKSC GPSTPAVLTQ KDLNAKETQN NAISNVEAKE
501: ILETENGSAP VKTCDLAAPT VLVQKDLNTK EIFQKEVPLP QANGEGSLVK EDSKAACLIL PEKVSPHLDG SANAQTLVKL PTLGPKAENS VEEKNSLNNL
601: NEPANSLKVI NVSVGNPPVE KAVLIDQTMG HHLEESATSI ESLKLTSERE TLTTPKKTRK PKTKTLKVEF KFFKLALGLR KKKVQRRERL STTVAGEIIS
701: EELLSKKRVK YQDTSLIAPS KMISSSDGAV TSDQQQPVGS SDLSEASQNA KRKRESVLLQ KEAVNILTRG VPETVVAKWD EEISASQKRG SKSEGASSIG
801: YVADEWDEEY DRGKKKKIRI KEESYRGPNP FQMLASKRQK ETKKKWTQSI TDAKTAYRI

Arabidopsis Description

UBP23Ubiquitin carboxyl-terminal hydrolase 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.