CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002086_P001	Maize	plastid	96.11	96.45
TraesCS2D01G517600.1	Wheat	mitochondrion	57.7	88.11
TraesCS2B01G544700.1	Wheat	mitochondrion	57.52	87.84
TraesCS2A01G516100.1	Wheat	mitochondrion	57.35	87.57
Os04t0647300-01	Rice	nucleus	72.04	68.87
Solyc07g007640.1.1	Tomato	cytosol	27.61	65.82
VIT_11s0118g00280.t01	Wine grape	mitochondrion	31.68	63.25
GSMUA_Achr7P17050_001	Banana	plastid	55.4	59.96
KRH03615	Soybean	cytosol	62.65	59.8
KRH20191	Soybean	plastid	62.3	59.26
HORVU2Hr1G114330.1	Barley	cytosol	58.23	58.75
VIT_11s0118g00290.t01	Wine grape	nucleus	35.22	56.53
EES12269	Sorghum	cytosol	17.88	27.45
EER92723	Sorghum	nucleus	17.35	26.78
EES07024	Sorghum	mitochondrion	18.23	24.58
OQU85579	Sorghum	nucleus	19.11	14.5
KXG22316	Sorghum	plastid	16.99	14.18
OQU90420	Sorghum	mitochondrion	17.35	13.3
OQU80649	Sorghum	nucleus	18.23	12.78
OQU84698	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	20.71	12.11
OQU89635	Sorghum	vacuole	19.47	12.06
EER89337	Sorghum	nucleus	19.47	12.0
KXG20513	Sorghum	golgi, plasma membrane	20.71	11.99
OQU92076	Sorghum	nucleus	18.05	11.78
OQU81355	Sorghum	cytosol, nucleus, plastid	1.42	10.26

Protein Annotations

MapMan:15.3.4.2.2	MapMan:19.2.3.1.1.8	Gene3D:3.30.40.10	Gene3D:3.90.70.10	EntrezGene:8079571	UniProt:C5Y918
EnsemblPlants:EES12962	ProteinID:EES12962	ProteinID:EES12962.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006464	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0008234	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	GO:GO:0046872	InterPro:IPR001607	InterPro:IPR013083	InterPro:IPR028889
PFAM:PF00443	PFAM:PF02148	ScanProsite:PS00972	PFscan:PS50235	PFscan:PS50271	PANTHER:PTHR43961
PANTHER:PTHR43961:SF3	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	EnsemblPlantsGene:SORBI_3006G239400	SUPFAM:SSF54001	SUPFAM:SSF57850
UniParc:UPI0001A873D8	InterPro:USP_CS	InterPro:USP_dom	RefSeq:XP_002448634.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_UBP
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:57999332..58003116

Molecular Weight (calculated)

62978.5 Da

IEP (calculated)

8.104

GRAVY (calculated)

-0.335

Length

565 amino acids

Sequence
(BLAST)

001: MSTPSAPPPC PHLAAHRLSS RPLRFLRRCL RVRPLGRPEI RRDPRELPRC SPCAAAAPSP TSRLYACLSC AAVFCPSHAA SHASASAGPG HQIAVDVDRA
101: ELFCAACGDQ VYDPDFDHAV FLAQSSSLLP STSASSPSPS AALRKRRRVD YRAWAPDPAE FALMSSADPT TSASAAAPAG LRGLNNLGNT CFMNSVLQAL
201: LHAPPLRNYF LGDRHNRFLC PRRTPVRHRA TDADAARVAC LACDLDEIYS AAFSGERMPY SPAKFLYSWW QHASNLASYE QQDAHEFFIS ILDHIHENIK
301: DDQQKSHAQA QGHGDCCIAH RVFSGILRSD VTCTSCGFTS TTFEPCMDIS LDMDAGDNSS FGVANTKPHV RNGERGLAGM NSKVSTLMRC LERFTRSERL
401: DAEQKFFCEH CNERQESLKQ MSIRRLPLVS CFHIKRFEHS SVKKVSRKVD HCLQFPFSLD MAPYLSSSIL RSRYGNRIFP AEASDADAVS EMSSEFEIFA
501: VITHSGKLEA GHYVTYLRLN NHWYKCDDAW VTRVEEHTVR TSQAYMLFYV QKTLYYKACE RAATV

Best Arabidopsis Sequence Match ( AT5G10790.1 )
(BLAST)

001: MSARISFLKN PDPCNHLSDY KLRYGTDGYK SFNNLFRCFN DARIKIKLQG IDIPRCSYCS VYQKRLYICL ICRSISCSSH ILLHTQLNKG HDIAIDVERS
101: ELYCCACIDQ VYDSEFDEVV VSKQLFGLGM SVKSGADVVA VRSNKKRRLD SQLIIGSNFL VSPRDRREKW TFPLGLRGLN NLGSTCFMNA VLQALVHAPP
201: LRNFWLSGQH NRDLCPRRTM GLLCLPCDLD VIFSAMFSGD RTPYSPAHLL YSWWQHSTNL ATYEQQDSHE FFISLLDRIH ENEGKSKCLY QDNEECQCIT
301: HKAFSGLLRS DVTCTTCGST STTYDPFIDI SLTLDSMNGF SPADCRKNRY SGGPSVNAIM PTLSGCLDFF TRSEKLGPDQ KLNCQSCGEK RESSKQMSIR
401: RLPLLLCLHV KRFEHSLTRK TSRKIDSYLQ YPFRLNMSPY LSSSIIGKRF GNRIFAFDGE GEYDSSSSSS PSAEFEIFAV VTHKGMLESG HYVTYLRLKG
501: LWYRCDDAWI NEVEEEVVRG CECYMLFYAQ ETVIQKAHKE LSYQVISMAD AFPFADC

Arabidopsis Description

UBP22Ubiquitinyl hydrolase 1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPE9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.